Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00316 ATGACGAACAAGAAGCAGTTAATGTCTTCAGCACCTTGGAGGGGGGAGAAAGAGGAGGAATTTTCCGACGCAAAGCTCAAGGTCACCAAGCAGCCAGGCGGTACTTCTACCATGCACGTTCCTCGCAAGAAGAGCATCAAATCGAAAAGCTCTAATGATAAAGACGACGATTCCTTAACCGAGATTGACCCTGAGCTCCGCTATAGCTTCCAGCGGAACTTCCAGTTTCTTCAACGAGTATTCAGCATTGACACTCTTGTCAAGCCTCTTCCACCTGCCATGGCTTATAATGTCTCCCGCAACTTGAGCTTCTTCACAAGAATTTTCACACAGTTCTTTGATCCGGAAGGTATTGCAAATGCGCAGAAATCACTCGGGCTCGGACAGGAAGAGAAAGCTCATGGAGACCCATTGCCGCAAGGTGGAGGGAGGAGCGAGATGGTTCCTGCTATGTTCATATTCGGAGATTCACTCATAGACAATGGAAACAACAACAACCTTGCCTCCTTAGCAAAAGCTAACTATTTTCCTTATGGCATCGACTTCAATGGCGGACCCACAGGTCGTTTTTCCAATGGCTACACCATGGTTGATGAAATAGCTGAACTGTTGGGGCTTCCATTAATTCCGTCATTCTCTGAAGCTTCCGGTGATCAAGTTCTTCACGGTGTAAACTATGCTTCTGCCGCTGCTGGGATTCTAGACAACACTGGCAGAAACTTCGTGAGTCGATATCCTTTTAATCAGCAAATAACTAACTTTCAGAGCACCCTCGACCAAATCACCAACAATCTCGGCGGTCAAGATACAGTGGCAAGAGCAATCGGCCGGAGCATATTCTTCATCGGAATGGGCAGCAATGACTACCTAAACAACTACCTCATGCCCAATTACAACACTAAGAACCAGTACGACGGCCCCCAGTTCGCCAATCTGCTGGTGCAGCAATACTCTCAGCAGCTCACTAGACTTTATAGTCTTGGAGCGAGAAAATTTGTAGTAGCTGGTGTGGGACAAATGGGTTGCATTCCAAGCATATTAGCTCAGAGCCCAGTGGGAAGCTGCTCAGAAGAAGTAAACCAGCTTGTTCTACCTTTTAACGCCAATGTCAAGGCAATGGTCAATAATCTCAACGCCAATCTACCCGGCTCTCGATTTACTTACATCGACATTGCTCGGATGTTCCGAGACATCCTCGTCAACGCACAATCATACGGACTGAGCGTGGTCAATAGCGGGTGTTGTGGAATAGGAAGAAACAGTGGGCAAATAACGTGTCTTCCATTTCAAACGCCGTGTCCAAACAGAGAACAGTATGTTTTCTGGGATGCGTTTCATCCGACAGAAGCTGTCAACATTATATTGGGAAGGAAGGCCTTCAATGGAGACACCACCGTCGTATATCCGATCAACATACAGCAGCTTGCCAGCCTTTAA 1437 47.04 MTNKKQLMSSAPWRGEKEEEFSDAKLKVTKQPGGTSTMHVPRKKSIKSKSSNDKDDDSLTEIDPELRYSFQRNFQFLQRVFSIDTLVKPLPPAMAYNVSRNLSFFTRIFTQFFDPEGIANAQKSLGLGQEEKAHGDPLPQGGGRSEMVPAMFIFGDSLIDNGNNNNLASLAKANYFPYGIDFNGGPTGRFSNGYTMVDEIAELLGLPLIPSFSEASGDQVLHGVNYASAAAGILDNTGRNFVSRYPFNQQITNFQSTLDQITNNLGGQDTVARAIGRSIFFIGMGSNDYLNNYLMPNYNTKNQYDGPQFANLLVQQYSQQLTRLYSLGARKFVVAGVGQMGCIPSILAQSPVGSCSEEVNQLVLPFNANVKAMVNNLNANLPGSRFTYIDIARMFRDILVNAQSYGLSVVNSGCCGIGRNSGQITCLPFQTPCPNREQYVFWDAFHPTEAVNIILGRKAFNGDTTVVYPINIQQLASL 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2525723 2533410 - Bma018771.1 Bma04g00316 80685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00316 478 PANTHER OS05G0419800 PROTEIN 130 478 - -
Bma04g00316 478 MobiDBLite consensus disorder prediction 11 26 - -
Bma04g00316 478 MobiDBLite consensus disorder prediction 1 59 - -
Bma04g00316 478 Pfam GDSL-like Lipase/Acylhydrolase 152 457 IPR001087 GO:0016788
Bma04g00316 478 Gene3D SGNH hydrolase 144 463 IPR036514 -
Bma04g00316 478 CDD SGNH_plant_lipase_like 149 463 IPR035669 -
Bma04g00316 478 SUPERFAMILY SGNH hydrolase 270 458 - -
Bma04g00316 478 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 130 478 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00316 - - - rcu:8263240 575.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02456 Bma-Chr1:82154533 Bma04g00316 Bma-Chr4:2525723 1.26E-113 dispersed
Bma02g00298 Bma-Chr2:3466329 Bma04g00316 Bma-Chr4:2525723 2.31E-26 dispersed
Bma04g00316 Bma-Chr4:2525723 Bma11g00972 Bma-Chr11:43437532 5.41E-129 dispersed
Bma04g00454 Bma-Chr4:3739256 Bma04g00316 Bma-Chr4:2525723 3.95E-93 transposed
Bma05g00885 Bma-Chr5:46612118 Bma04g00316 Bma-Chr4:2525723 3.39E-61 transposed
Bma01g02439 Bma-Chr1:82017806 Bma04g00316 Bma-Chr4:2525723 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1667 . Blo12g00830 . Bda03g00345 . Bpe04g00305 Bma04g00316 . . . . . . . . Cpe06g01005 . . . . . . . . Cla08g00065 Cam08g0062 Cec08g0189 Cco08g0120 Clacu08g0077 Cmu08g0075 Cre08g0067 . . . . . . . Cme09g00042 . . . . . . . . . . Cmo09g01299 . . . Car09g01142 . . . . . . . . . . . . . . . . Lsi08g00051 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002428 2 2 3 2 3 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 3 2 3 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00316 Bma_Chr04 FPKM 3.601199 4.47635 5.472816 3.134516 0.544163 0.678422 0.0 0.0 0.0 0.0