Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00318 ATGGTGGTTCATTTGCAAAGGTGTGGTTGTACGTATTTTAGCGGTAGTCTAAATCAGAAGGGATTTAGAGGTGAGAGCATGGGCTGTATTTGCTCGAAAGAATCGCCAGAACCAGAGGATGTCGATGACAACGAGAAAGCGGGAGAGTTTAACAAGACTTCAGACCAATCGGGCACTCCTACTCCTTCAAAGAGGGAAGATTTTGTTCTAAAAATAAGAGGCAGTGTTCAAAATGTTGGTTTAGTTAGCTTTTTATCGAGGCAGGCGTCACAAACAAATGGGGGTCCGGTTCAAGTGCGAAAAGGGAAAAATGGCAGTTCCAATGACGAAGAAAACAAAGCGAGAAATAACGAAAGAAGAAGAAAGGATCATAATCAGAAATTGGTGAAGAAGGATGCGAGAGTGAATGGAAAACTACCGCAGATGTCAAGAATAGTCAGCCTGCCAAATGGAGCAGAAGGTGGACAAGTTCTTGCTGGATGGCCATCTTGGTTAGCTTCAGTAGCCGGAGATGCCATCAAAGGATGGATTCCACGACGAGCAGACTCATTTGAGAAGCTAGACAAAATTGGTCAGGGAACTTACAGCAGTGTATATAGGGCCCGTGACTTGGAAACTGGTAAAATTGTTGCATTGAAGAAAGTAAGATTTGTAAATATGGATCCAGAAAGTGTACGTTTTATGGCTAGAGAAATATGTATTTTGCGTGAACTTGATCATCCAAATGTTATGAAGCTTGAGGGTTTAGTTACTTCCAGAATGTCGTGCAGCTTGTACCTTGTCTTTGAGTACATGGAACATGACCTAGCTGGGCTCGTAGCAACTCCTGGCATCAAGTTTACAGAGCCGCAGATTAAATGCTTTATGCAACAACTATTACATGGGCTTGAACACTGCCACAGTCGTGGTGTTCTGCACCGAGACATCAAGGGCTCAAATCTTCTCATTGACAACAATGGAGTTCTCAAGATTGGAGACTTTGGTCTGGCAACTTTTTTTGAGCCTGATCAAAAGCAGCCTTTAACTAGTCATGTGGTGACGTTGTGGTATAGGCCACCTGAGCTTTTGCTTGGTTCTACCAAGTATGGACCAGCCATAGATCTTTGGAGCACTGGATGCATACTTGCAGAATTGTTCGCTGGTAAACCTATTATGCCCGGGAGAACAGAGGTTGAACAAATGCATAAAATCTTTAAACTATGTGGTTCGCCATCTGAGGATTATTGGCAAAGAACTAAATTTCCGCATGCAACAAGTTTCAAGCCTCACCGCCCTTACAAGCGATGTCTTATTGAGACATTCAGGAATTTCCCTTCTTCAGCTTCAGCTCTTGTTGATAAGCTTCTATCGATTAAGCCAGAGGAACGAGGATCTGCTAATTCGGCTCTTAGGAGTGAGTTTTTCCGAACAGATCCCCTCCCTTGTGACCCTTCAACATTACCAAAATATCCTCCAAGTAAGGAGTTTGATGCCAAGTGCCGAAATGAAGAAGCAAGAAGGCGAAAAGTGGAAGCCGTGAAGGGACGGGGTCCTGAATCAGTTAGAAGAGGCTCAACCAAACTAGTTGCTGAAGGAGATCCTACATTACCGGGCAAGTCAAATCCAAAAACATCCAGCCATAAACTCAGTGCCAGAGCTGATGGCGGAACTGGAGTTTCTATCAAGCTGCTTAGAGGAACTTTGCGTGATGGATTCTCCCATTCGACTTCTATGATTCACCCCAATGTATTAGGATCATCCTGGAATAAGCCACGCAAAGCTACAAGGAAGGATGACGAATTATGGCTTCAGCAACTGCAGAAGCCTCGAGGCATAGAAGATTTATCCAACCCTTCCCTTGAAAAAGACAATAGCTTGCCTGAAAAAGATTTAAGCTCGGGACATGCACGAAAGAAAAATAGAATTAACTACTCAGGGCCATTGCTGGCTCCGGGGAGGAACGTAGAAGACATGCTCAAAGAGCATGAAAGACAGATCCAACAGGCTGTCCGGAATGCACATCTTGGCAAATTGAGGACTACTGAAAAGCCATTTCAAAAGTAA 2043 43.91 MVVHLQRCGCTYFSGSLNQKGFRGESMGCICSKESPEPEDVDDNEKAGEFNKTSDQSGTPTPSKREDFVLKIRGSVQNVGLVSFLSRQASQTNGGPVQVRKGKNGSSNDEENKARNNERRRKDHNQKLVKKDARVNGKLPQMSRIVSLPNGAEGGQVLAGWPSWLASVAGDAIKGWIPRRADSFEKLDKIGQGTYSSVYRARDLETGKIVALKKVRFVNMDPESVRFMAREICILRELDHPNVMKLEGLVTSRMSCSLYLVFEYMEHDLAGLVATPGIKFTEPQIKCFMQQLLHGLEHCHSRGVLHRDIKGSNLLIDNNGVLKIGDFGLATFFEPDQKQPLTSHVVTLWYRPPELLLGSTKYGPAIDLWSTGCILAELFAGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQRTKFPHATSFKPHRPYKRCLIETFRNFPSSASALVDKLLSIKPEERGSANSALRSEFFRTDPLPCDPSTLPKYPPSKEFDAKCRNEEARRRKVEAVKGRGPESVRRGSTKLVAEGDPTLPGKSNPKTSSHKLSARADGGTGVSIKLLRGTLRDGFSHSTSMIHPNVLGSSWNKPRKATRKDDELWLQQLQKPRGIEDLSNPSLEKDNSLPEKDLSSGHARKKNRINYSGPLLAPGRNVEDMLKEHERQIQQAVRNAHLGKLRTTEKPFQK 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2543533 2548788 - Bma018773.2 Bma04g00318 80687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00318 680 CDD STKc_CDK9_like 184 468 - -
Bma04g00318 680 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 110 669 - -
Bma04g00318 680 MobiDBLite consensus disorder prediction 476 546 - -
Bma04g00318 680 Pfam Protein kinase domain 184 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00318 680 ProSitePatterns Protein kinases ATP-binding region signature. 190 213 IPR017441 GO:0005524
Bma04g00318 680 MobiDBLite consensus disorder prediction 487 514 - -
Bma04g00318 680 Gene3D Phosphorylase Kinase; domain 1 171 266 - -
Bma04g00318 680 MobiDBLite consensus disorder prediction 35 50 - -
Bma04g00318 680 SUPERFAMILY Protein kinase-like (PK-like) 178 476 IPR011009 -
Bma04g00318 680 PANTHER CELL DIVISION PROTEIN KINASE 110 669 - -
Bma04g00318 680 Gene3D Transferase(Phosphotransferase) domain 1 267 508 - -
Bma04g00318 680 MobiDBLite consensus disorder prediction 104 128 - -
Bma04g00318 680 SMART serkin_6 184 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00318 680 MobiDBLite consensus disorder prediction 90 128 - -
Bma04g00318 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Bma04g00318 680 MobiDBLite consensus disorder prediction 602 642 - -
Bma04g00318 680 ProSiteProfiles Protein kinase domain profile. 184 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00318 680 MobiDBLite consensus disorder prediction 616 630 - -
Bma04g00318 680 Coils Coil 645 665 - -
Bma04g00318 680 Coils Coil 107 127 - -
Bma04g00318 680 MobiDBLite consensus disorder prediction 35 64 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01044 Bma-Chr3:12470296 Bma04g00318 Bma-Chr4:2543533 7.15E-144 dispersed
Bma04g00318 Bma-Chr4:2543533 Bma15g00068 Bma-Chr15:810870 5.92E-10 dispersed
Bma11g00324 Bma-Chr11:3049421 Bma04g00318 Bma-Chr4:2543533 4.07E-119 dispersed
Bma11g00543 Bma-Chr11:7091061 Bma04g00318 Bma-Chr4:2543533 4.19E-08 dispersed
Bma04g00318 Bma-Chr4:2543533 Bma12g00731 Bma-Chr12:33462028 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66437 PF00069 Pkinase 2.80E-69 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00318 K08819 - twl:120008126 848.58