Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00342 ATGTTTGTGTTCGGAGACTCTTTGGTTGACGTTGGCAACAATAATTTCCTGAGGTCAATGGCCAGAGCTAACTACGCTCCTTATGGCTATGATTTCAGTAGCGGTCCCACCGGAAGATTTTCCAACGGAAAAAACTTGGTCGACATGTTTGCTGACTTGTTGGGTCTTCCCTATCCGCCGCCATTTGCAGACCCCGAGACAGTTGGATCCAAAATACTTAACGGCGTTAATTACGCTTCTGCTGCTGCCGGAATCCTCGACGAAACTGGCCAACATTATGGACAGAGATTTAGTCTGAGCCAGCAAGTGGTTAATTTTGAGATGACGCTGAACCAGCTAAGAAGTCTGATGAGTGCAGGAAATTTGACCCAGTACCTTGCCAAATCTATCGCCGTTCTGGTGATCGGAAGCAACGACTATATAAACAACTATCTCCTTCCTTCTCTCTACACTTCCAGCCTCACCTACTCTCCTCCTCAGTTTGCCAATCTTCTTCTCAACCACTATGCCCGTCAACTTCTGGCATTGCACAGCGTGGGATTGAGGAAATTCATGGTGGCCGGCGTGGGACCATTGGGTTGCATTCCGAACCAGAGGGCCACCGGCCTAGCTCCGGAAGGACGGTGCCTGGATTCCGTCAATCAAATCCTTGGGACATTGAACGAAGGCCTCCGATCGCTCGTCGACCAGCTTAACACAAACCGCCCAGGGGCCATGTTCGTTTATGCGAACACCTACGGTGCTGTCGGCGACATTTTGAACAACCCCGCCACCTACGGATTCAGCGTGGTGGACATGGGATGCTGCGGACTCGGGAGAAACCAAGAGGAAATAACGTGTCTTCCCTGCCAAGTTCCATGCGCCGATCGGAACCAGTTTGTGTTTTGGGACGCCTTTCATCCAACCCAAGCTGCCACCGCGGTTCTTGCTTTGAGGGCATTCAGGGGCCCACCTTCTGATTCTTATCCAATGAACATCCAACAAATGGCTCTTCTCTGA 999 50.95 MFVFGDSLVDVGNNNFLRSMARANYAPYGYDFSSGPTGRFSNGKNLVDMFADLLGLPYPPPFADPETVGSKILNGVNYASAAAGILDETGQHYGQRFSLSQQVVNFEMTLNQLRSLMSAGNLTQYLAKSIAVLVIGSNDYINNYLLPSLYTSSLTYSPPQFANLLLNHYARQLLALHSVGLRKFMVAGVGPLGCIPNQRATGLAPEGRCLDSVNQILGTLNEGLRSLVDQLNTNRPGAMFVYANTYGAVGDILNNPATYGFSVVDMGCCGLGRNQEEITCLPCQVPCADRNQFVFWDAFHPTQAATAVLALRAFRGPPSDSYPMNIQQMALL 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2786968 2788334 - Bma018801.2 Bma04g00342 80711

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00342 332 CDD SGNH_plant_lipase_like 1 317 IPR035669 -
Bma04g00342 332 Gene3D SGNH hydrolase 1 316 IPR036514 -
Bma04g00342 332 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 1 331 - -
Bma04g00342 332 Pfam GDSL-like Lipase/Acylhydrolase 2 310 IPR001087 GO:0016788
Bma04g00342 332 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 1 331 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00342 - - - nnu:104594025 510.76
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02456 Bma04g00342 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00342 Bma-Chr4:2786968 Bma14g00972 Bma-Chr14:11358174 9.18E-116 dispersed
Bma04g00393 Bma-Chr4:3213383 Bma04g00342 Bma-Chr4:2786968 5.49E-73 dispersed
Bma08g00223 Bma-Chr8:2774113 Bma04g00342 Bma-Chr4:2786968 4.62E-86 transposed
Bma01g02456 Bma-Chr1:82154533 Bma04g00342 Bma-Chr4:2786968 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1760 Blo01g01690 Blo12g00809 . Bda03g00365 Bpe02g00252 . Bma04g00342 Bma01g02456 . . . Cma09g01244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00915 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006909 2 0 2 2 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00342 Bma_Chr04 FPKM 0.0 0.727091 0.53603 0.619924 0.348039 0.0 0.0 0.0 0.0 0.0