Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00343 ATGGTTGTGAACGACCGGCCGCTGAAGAGGATGAAGAGGAGAGTCACGGCGGACTTTTATGACTTTCTGACGTTTTTAAACGCTGATTTTTCTTCTACCCATCCCGATTCTCAACCCCAACCGTTTCGCGAGATAGTGCGGACCTTTCTTTATAGGCACGCGCGAGCCACCTTCCCTCCCTCCCTGTTTTCTCCCCTAACGACTTGGCAAATCCTCTTCCGAGTCGGCGATCTGGTCTTGGAAGTGTCCGATTCGGCTCCCGTGGTTGTTGCCTTAGATATAATCGAAGAAGACGTCACCAGATCTAGATCCGTGTACTGTGACCAGTGCCGAGTAGTCGGTTGGAGTGGGCATCCGGTGTGTAGAAAGAGATACCATTTCATAATAAAATCTCAGAGCAATCCTGTGGACGGGGGATACCAGAAACCTTGCTCAATATGCGGGAATCTGCTTCGATTATCCGAATCAAGGTGCAAGTGGTGCGATTCTGTAATCACCTCCGAAGAACTTGAAGATTGGGTTAACAATCAGTTTGAAGATAACACCCATGTGTTGCACGGCGTTGTTCATTCCAATGGCTATGGTCACCTTCTGACTGTCAATGGCAGGGAAGGTGGTTCCAAGTTTCTTTCTGGGTTTGATGTTATGAACTTCTGGGATAGGCTCTGCACCGCCCTTTCTGTCAGGAAGGTGAGTGTTATGGATGTGTCAAAGAAGTATGGAACTGAGTACAGGCTGCTTCATGCAATAGCCGAAGGACATTCGTGGTACGGGAAGTGGGGTTACGAATTTGGAGCTGGTAGCTATGCTCTTACCCTCAATGCTTACCAAATGTCAGTGATTAACCTCTCTTCCACGCCCTTGGCCACCTTAATGCACCCAGGGCGAAAACCCCGGACCCGTATGCAATCCTTGATTGCATTATACCAGTCCTTGGCAGAGAAAGAGCTTCTCACTCTGAAGGACCTCTTCTCCTTTTTGTTGAGTTTGATCCATAGAAGTCATAAACCACTACCCCATAAATCTTCCCAAAAATTCGAATGGGGCCCCCCAAATGTGCTGTGTGCGTGGACAAGGGACGACGTTGAGTGTGTTCAACAAGCTATGATAAAGGTTCTACTTGCGTCAGCTGGTGCTGACTGTTGGGTCGCGAGGCGGTCACTCAAGGGTGCAATGTGTAAAGTCGCTACACCCGAGCTTATCGATTATTCTCTCAAGCACCTAGCAGGGAAAGTTGCATCCGGTGGCATGGTAGTCCAAACTCGGTGCAATCCCAATTTTCCTGATCTTGAATTCAGGCTTGAGCCGGTGAGTTTGATACATGGTAGTTTCTACTCTTGTGAAAAAGAACCAACAGAAAAACAGATCATTGGACACCTCAAGTTTTTGTACGAGTCAATTGTTCACCCCAAGACCATGGTTGACTATAGACCTCTTGCACTGAGGGAACACATTTTTGACTCTGCATCTAAAATTCTAGACTGCAAACAGTTTATGAAAGTCTACAAGATCGAACAAAATGAAAATGCCCTCGAAACCTCTTCGAGAGATATTCGCTTGTGGTGTCATGTTGAGCTTTCAGACCAACCCAAAGATGATTTGGTCATTCCACCTGAGCTAATTATTCTACCCTCGAATGCAACTGTTGCTGACCTTAAGGATGAAGCGGCAAAGACATTTTCAGAACTTTATGCCATGTTTAAGTCCCTAGACATTGATGACCTACATGAATATGGGTCCATAGAAGATACCATAACCGCAAGGCTTTTGGTTGGATCAAGTGGTTCAATTCAAGTTATAGGGAAATGTGATGTAAAACACGGACTGGATCGATATAGAATGGAGAGGGGAATGGAGAGCTGGATTGTAGATTGTCTTTGTGGAGCTAAAGATGATGATGGAGAAAGGATGTTGGCCTGTGACGTGTGCAGTGTGTGGCAACATACCAGGTGCTCAGGCATTGGCAGCTTTGATGCAATCCCATCTAAGTTTATTTGCAAAAGATGCGATAATTCTTGCAGTTCAGAACAAAATGTGGACAAAGAAAATTTTGATCTTTCAGCATCCTGCACAAGCTGTAGGGCTGAAGAAATGGCCAACAGTGGGTCCAAGACAGCATCTAAATTGACAATGCAAATTGATGTACGTTAG 2151 45.84 MVVNDRPLKRMKRRVTADFYDFLTFLNADFSSTHPDSQPQPFREIVRTFLYRHARATFPPSLFSPLTTWQILFRVGDLVLEVSDSAPVVVALDIIEEDVTRSRSVYCDQCRVVGWSGHPVCRKRYHFIIKSQSNPVDGGYQKPCSICGNLLRLSESRCKWCDSVITSEELEDWVNNQFEDNTHVLHGVVHSNGYGHLLTVNGREGGSKFLSGFDVMNFWDRLCTALSVRKVSVMDVSKKYGTEYRLLHAIAEGHSWYGKWGYEFGAGSYALTLNAYQMSVINLSSTPLATLMHPGRKPRTRMQSLIALYQSLAEKELLTLKDLFSFLLSLIHRSHKPLPHKSSQKFEWGPPNVLCAWTRDDVECVQQAMIKVLLASAGADCWVARRSLKGAMCKVATPELIDYSLKHLAGKVASGGMVVQTRCNPNFPDLEFRLEPVSLIHGSFYSCEKEPTEKQIIGHLKFLYESIVHPKTMVDYRPLALREHIFDSASKILDCKQFMKVYKIEQNENALETSSRDIRLWCHVELSDQPKDDLVIPPELIILPSNATVADLKDEAAKTFSELYAMFKSLDIDDLHEYGSIEDTITARLLVGSSGSIQVIGKCDVKHGLDRYRMERGMESWIVDCLCGAKDDDGERMLACDVCSVWQHTRCSGIGSFDAIPSKFICKRCDNSCSSEQNVDKENFDLSASCTSCRAEEMANSGSKTASKLTMQIDVR 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2790408 2793122 + Bma018802.1 Bma04g00343 80712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00343 716 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 683 - -
Bma04g00343 716 SMART PHD_3 624 670 IPR001965 -
Bma04g00343 716 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 683 - -
Bma04g00343 716 Pfam PHD-finger 625 671 IPR019787 -
Bma04g00343 716 CDD PHD_MMD1_like 624 669 - -
Bma04g00343 716 ProSitePatterns Zinc finger PHD-type signature. 625 669 IPR019786 -
Bma04g00343 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 677 IPR013083 -
Bma04g00343 716 SUPERFAMILY FYVE/PHD zinc finger 614 671 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00343 - - - qsu:112016316 845.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01160 Bma-Chr1:12683074 Bma04g00343 Bma-Chr4:2790408 4.12E-93 dispersed
Bma04g00343 Bma-Chr4:2790408 Bma05g00538 Bma-Chr5:28923044 2.00E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1768 . Blo12g00808 . Bda03g00366 . Bpe04g00328 Bma04g00343 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005913 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 2 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57138 PF00628 PHD 5.80E-09 CL0390 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00343 Bma_Chr04 FPKM 1.337243 1.21793 1.449326 0.965337 5.76132 6.189457 5.57449 0.896073 0.700584 0.560929