Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00348 ATGGGGAATAGGAGCAAGAAAGATCCAGTTGAAGACTCGTCTTCTTCTTCATTGTATTCATCAAGCTCTGACGAAACAAGTCGTTCTTCTAGGAAGCGTCATTCCTCTCGTAGAGACAGCAGGAAGAAAGACAGAAAGAGGGAGAAAAAAACTGGTGATAAGGAGAAGAAGAGGATAGAGAGGGATAAATATAGAGATCAAGCCAGAGAAAAAAAGAGAAGGAAACTGAAAAGGAGGGGGAAAAGAGAATCGATCGATTCTGACTCTGGGTATTCGAGTGAAGGTGACTCCCAGGGCGAAATGAGTCGAATTAAACCTGAACTTCTTAAAATGATTGATGATGGTCAAGCGGTTGATATCAAAGGAGTATCAGAGAAGCGTCTCATGAAGTACTTAAAAAAGTTGTTTGTCTCATTAAATCTGAAAGAAAATGGAGACAGGGTGTTCTTATTGCCATCACACGCCCGCCCAACATTAGAGCTAATTGGACCCCTCATTGAAACAGAAGAATCAACTGAGAAAAGGCATGATCCATCTGTATTTGCAAAAGAGGAGCAGTTAGGACCAGTGAACAAGGGAGATTTGCACACAACGGATGACACTGACAGAGTTGGAGACTCTTCATGCCAAGAAAATGCTGCTTTTGCTCCTAAGAAAAGAGTTCTTGGTCCTGAAATGCCTTCAGCTGAGGTACTTGCTGCTGCAGCCAAACTAACCGAAGCACAAGCTGAGCTAAGAGATGCTGAGTTGGATGAAGATATTGGATTATTCATAGGACCTCCACCGCCTGCTGTAGTTGCTGAAGCTGAATCAGCAAACGAGGCTGAGCGATTTGAAGAGGTTACAAGAATCATGGCAGTTGACGCAGCTGATTCTCCCTATGATGTCGTGGGGGCAAACCGAAACATGTCCACTGAAAATATTAAAAAAAGATATTGGAAGATTTCCCTTTTGGTGCACCCGGATAAATGTTCTCACCCTCAAGCTCATCAAGCCTTCATTAAATTGAACAAAGCTTTTAAGGAATTACAAGATCCCATAAAGCGAGAAGCTCTAGATGAGAAAATCAAAGTCAAGGAAGAAGAAGAAGCATTCAAAATAGAATTGCGAGCAATGCGCGAGGCAGCACAATGGAGAAAATTGCAAGGTATATCAATGGAAGGTGATGATGAGCTATTGGCTGAGTTTGATGTTAAAGCACCACCAAAAAGAGAAGAATGGATGACAACTTTACCTCCCGAGAGGCAGCCTGGTGTGAGCATGCAATCGTCCAAATTTAGCAGGGGTTCAAAAGAAGGTCGTGGCGATACAAGTATTTGGACCGACACTCCATTAGATAGAGCCCAGAAAGCAAAGATGAATTACTTAGAAGCCTATAATGAAGCAACAGCACTTGCTTCAAAGGCAGAAGAAAAGAAAGCGTCTGATGCAGATTTAGTGGATAAGTACAATAAAGAGAAACGATCGAAATCATTGGTACAGAAGCATCGCGAGGAGGGTAAAAGTTCGAAGAAAAAATCAGAGATAAAACGAGAGAAAGAAGAGTGGGCTGGGCAACATCCATGGAAGCCATGGGATCGTGAGAAAGACTTGGCTGCAGGGAGGCAATCTGTTAAGCTTGATTCGGAGAACATGACTCAGGGTCTAACTTCGAGGTTTTCTTCAGGATCCTTTCAAAGAAACTTCCTATAA 1692 42.61 MGNRSKKDPVEDSSSSSLYSSSSDETSRSSRKRHSSRRDSRKKDRKREKKTGDKEKKRIERDKYRDQAREKKRRKLKRRGKRESIDSDSGYSSEGDSQGEMSRIKPELLKMIDDGQAVDIKGVSEKRLMKYLKKLFVSLNLKENGDRVFLLPSHARPTLELIGPLIETEESTEKRHDPSVFAKEEQLGPVNKGDLHTTDDTDRVGDSSCQENAAFAPKKRVLGPEMPSAEVLAAAAKLTEAQAELRDAELDEDIGLFIGPPPPAVVAEAESANEAERFEEVTRIMAVDAADSPYDVVGANRNMSTENIKKRYWKISLLVHPDKCSHPQAHQAFIKLNKAFKELQDPIKREALDEKIKVKEEEEAFKIELRAMREAAQWRKLQGISMEGDDELLAEFDVKAPPKREEWMTTLPPERQPGVSMQSSKFSRGSKEGRGDTSIWTDTPLDRAQKAKMNYLEAYNEATALASKAEEKKASDADLVDKYNKEKRSKSLVQKHREEGKSSKKKSEIKREKEEWAGQHPWKPWDREKDLAAGRQSVKLDSENMTQGLTSRFSSGSFQRNFL 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2820678 2834534 + Bma018807.1 Bma04g00348 80717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00348 563 MobiDBLite consensus disorder prediction 1 104 - -
Bma04g00348 563 ProSiteProfiles dnaJ domain profile. 292 356 IPR001623 -
Bma04g00348 563 MobiDBLite consensus disorder prediction 466 536 - -
Bma04g00348 563 Gene3D DnaJ domain 277 374 IPR036869 -
Bma04g00348 563 MobiDBLite consensus disorder prediction 466 563 - -
Bma04g00348 563 SMART dnaj_3 291 348 IPR001623 -
Bma04g00348 563 MobiDBLite consensus disorder prediction 539 563 - -
Bma04g00348 563 MobiDBLite consensus disorder prediction 190 209 - -
Bma04g00348 563 PRINTS DnaJ domain signature 312 327 IPR001623 -
Bma04g00348 563 PRINTS DnaJ domain signature 294 312 IPR001623 -
Bma04g00348 563 PRINTS DnaJ domain signature 328 348 IPR001623 -
Bma04g00348 563 CDD DnaJ 293 345 IPR001623 -
Bma04g00348 563 MobiDBLite consensus disorder prediction 46 69 - -
Bma04g00348 563 Coils Coil 231 251 - -
Bma04g00348 563 Coils Coil 445 472 - -
Bma04g00348 563 SUPERFAMILY Chaperone J-domain 257 350 IPR036869 -
Bma04g00348 563 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 8 563 - -
Bma04g00348 563 MobiDBLite consensus disorder prediction 408 441 - -
Bma04g00348 563 Coils Coil 54 74 - -
Bma04g00348 563 Pfam Protein of unknown function (DUF3752) 401 554 IPR022226 -
Bma04g00348 563 Pfam DnaJ domain 293 353 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00348 - - - hbr:110635282 625.165
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00348 Bma-Chr4:2820678 Bma07g01426 Bma-Chr7:50058935 1.84E-11 dispersed
Bma04g00348 Bma-Chr4:2820678 Bma11g00869 Bma-Chr11:31837762 1.19E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1411 . . . Bda03g00370 . Bpe04g00333 Bma04g00348 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g00995 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011130 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00348 Bma_Chr04 FPKM 2.230811 3.21555 1.063369 0.942041 8.324512 6.511726 7.687572 0.709594 0.792306 0.658028