Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00357 ATGAGATTAACCGAGGAGGACAGTGTTTCTGCGTCGACAAGGCCATTGGTGTTTGCTTACTACGTTACGGGCCATGGCTTCGGTCATGCCACTCGGGTTGTCGAGGTTGTTCGCCATCTAATATCTGCTGGACACAATGTACACGTAGTCTCCGCTGCTCCTGAATTTGTCTTCACTTCTGAAATTCAGTCACCTAGGCTGCTCATTCGAAAGGTATTGTTGGACTGTGGAGCCGTTCAAGCAGATGCATTAACAGTTGATCGATTAGCATCCTTGGAGAAGTACTCTGAGACAGCTGTTGTGCCTCGTGCTTCTATTTTGGCTACAGAAGTTGAGTGGCTGAATTCCATCAAAGCTGATTTAGTGGTTTCAGATGTTGTACCAGTTGCTTGCCGTGCAGCTGCTGATGCTGGAATTCGATCTGTTTGTGTGACCAACTTCAGTTGGGATTTCATCTATGCTGATTATGTAATGGATGCCGGGCATCATCACCGTTCTATAGTGTGGCAGATAGCAGAAGATTATTCGCATTGTGAGTTTCTTATCCGTCTCCCGGGATACTGCCCAATGCCTGCTTTCAATGATGCTATTGATGTACCTCTTGTTGTCAGGAGGTTGCATAAGTCTCGTGGGGAGGTAAGGAAGGAACTTGGCATTGGGGAGGATGTAAAGCTAGTGATCCTTAATTTTGGTGGACAGCCTGGTGGATGGAAGTTGAAGGAAGAATATTTGCCTTCTGGCTGGCAGTGTCTGGTCTGTGGAGCCTCTGAAACTCAAGATCTCCCTCCAAATTTCATAAAGGTTGCGAAGGATGCTTACACACCTGATCTGATAGCAGCGTCTGATTGTATGCTTGGAAAAATTGGTTATGGCACTGTTAGCGAAGCCCTGGCATTCAAGGTGCCTTTTGTTTTTGTGAGAAGAGACTATTTCAACGAAGAGCCCTTTTTAAGGAATATGCTTGAGTATTATCAATGTGGTGTCGAGATGATACGGAGAGATTTACTCACAGGTCACTGGAAACCTTACCTTGAACGTGGTATTAGTCTAAAACCATGCTATGAGGGAGGCATCAACGGCGGTGAGGTGGCTGCCCACATCTTACAAGAAACTGCAACTGGAAAAAACAGTGTTTCAAATAAGCTTAGTGGTGTAAGAAGATTGAGAGATGCTATAGTCCTTGGGTATCAGCTACAAAGGGCCCCTGGACGTGATCTCTGCATTCCAGATTGGTATGCCAATGCTGAACATGAACTTGGACTTTCAAATAGATCATCGAAGTTTCAAGATGAGAAGAGCTTTGATATTGACTTGTCTATTGGAGACTTTAACATACTTCATGGAGATGTTCAAGGTCTATCAGACACTATGAGTTTCTTAAAAAGTTTGGCAGAATTAGATATTGTAAATGATTCAGGGAAGAACAAAGAGAAGCGCCAGATGCGAGAGCAAAAGGCTGCGGCTGGACTCTTTAATTGGGAGGAAGATATTTTTGTGGCAAGAGCACCTGGTAGGTTGGATGTAATGGGAGGTATCGCTGACTACTCTGGAAGCCTAGTCTTGCAGATGCCTATTAGAGAAGCTTGTCATGTTGCTGTTCAAAGGAACCATCCAAGTAAACATAGACTTTGGAAACATGCCCAAGCTCGGCAGAATGTCAAGGGGCAAGGAGCATCACCTGTTTTGCAAATAGTGTCTTATGGGTCTGAATTGAGCAATCGGGCCCCAACCTTTGACATGGATTTATCTGATTTCATTGACGGTGGGAGACCTATATCATATGAGAAGGCAAAGAAGTACTTTTCCCAAGATCCTGCCCAAAAGTGGGCGGCATATGTTGCTGGAACATTATTGGTTTTAATGACAGAATTGGGTGTGCATTTTAAAGACAGTATCAGCTTGCTGGTTTCTTCTGCAGTTCCAGAAGGCAAAGGTGTATCATCATCAGCCTCTGTGGAGGTTGCTACCATGTCTGCTATAGCTGCAGCTCATGGATTAAGTATCAATCCAAGAGAACTAGCTTTGCTTTGCCAAAAGGTGGAGAACCACATTGTTGGAGCTCCATGCGGTGTGATGGACCAGATGGCTTCCGCATGTGGTGAAGCCAATAAACTACTGGCAATGTTGTGCCAGCCTGCCGAGGTGCTTGGACTTGTTGAAATTCCAAATCATATTCGATTTTGGGGAATTGATTCAGGAATACGACATAGTGTTGGAGGTGCAGACTATAGTTCTGTTAGGATAGGTGCATTTATGGGTCGGAAAATAATCAAGTCTACAGCATCTTCCATGTTGTTGCATTCTTTGTCTACTGCTAACGGGATAAACACTGATGACACGGAGGATGACAATGTTGAGCTGCTTGAAGCTGAATCTTCACTAGCTTACTTATGCAACCTACCCCCTCATAGGTATGAAGCAATTTATTCTAAGGTGCTTCCTGAGTCCATCCTAGGTGGAATGTTTCTGGAGAAGTTTTCAGATCACGGTGATCATGTCACGGTAGTTGATGAGAAGCGTATTTATGGAGTGAAAGCATCTGCCAGGCATCCTATATATGAAAATTTCCGTGTGAAGGCTTTCAAGGCGTTGCTAACTTCAGCAAATTCTAGCGAGCAACTTACCACTCTAGGTGAATTGTTGTATCAGTGCCATTATAGTTACAGCGCTTGTGAACTGGGCTCAGATGGCACGGATAGGCTCGTGCAGTTGGTGCAAGAAATGCAGCATTCTAAGTCATCCAAGCCCGAAGATGAAACATTGTATGGAGCAAAGATTACTGGTGGGGGTTCTGGTGGAACTGTTTGCGTGATCGGCAGAAACAGTCTAAGAAGCAGCCAACATATCCTTGAGATTCAGCGAAGATACAAATGTGCAACAGGGTACTTGCCATTTATTTTTGAAGGTTCTTCACCAGGCGCCGGGAAGTTTGGGTACCTGAAAATCCGTCGCCGGCTATCCAACAATTCATAA 2973 44.6 MRLTEEDSVSASTRPLVFAYYVTGHGFGHATRVVEVVRHLISAGHNVHVVSAAPEFVFTSEIQSPRLLIRKVLLDCGAVQADALTVDRLASLEKYSETAVVPRASILATEVEWLNSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYADYVMDAGHHHRSIVWQIAEDYSHCEFLIRLPGYCPMPAFNDAIDVPLVVRRLHKSRGEVRKELGIGEDVKLVILNFGGQPGGWKLKEEYLPSGWQCLVCGASETQDLPPNFIKVAKDAYTPDLIAASDCMLGKIGYGTVSEALAFKVPFVFVRRDYFNEEPFLRNMLEYYQCGVEMIRRDLLTGHWKPYLERGISLKPCYEGGINGGEVAAHILQETATGKNSVSNKLSGVRRLRDAIVLGYQLQRAPGRDLCIPDWYANAEHELGLSNRSSKFQDEKSFDIDLSIGDFNILHGDVQGLSDTMSFLKSLAELDIVNDSGKNKEKRQMREQKAAAGLFNWEEDIFVARAPGRLDVMGGIADYSGSLVLQMPIREACHVAVQRNHPSKHRLWKHAQARQNVKGQGASPVLQIVSYGSELSNRAPTFDMDLSDFIDGGRPISYEKAKKYFSQDPAQKWAAYVAGTLLVLMTELGVHFKDSISLLVSSAVPEGKGVSSSASVEVATMSAIAAAHGLSINPRELALLCQKVENHIVGAPCGVMDQMASACGEANKLLAMLCQPAEVLGLVEIPNHIRFWGIDSGIRHSVGGADYSSVRIGAFMGRKIIKSTASSMLLHSLSTANGINTDDTEDDNVELLEAESSLAYLCNLPPHRYEAIYSKVLPESILGGMFLEKFSDHGDHVTVVDEKRIYGVKASARHPIYENFRVKAFKALLTSANSSEQLTTLGELLYQCHYSYSACELGSDGTDRLVQLVQEMQHSKSSKPEDETLYGAKITGGGSGGTVCVIGRNSLRSSQHILEIQRRYKCATGYLPFIFEGSSPGAGKFGYLKIRRRLSNNS 990
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2876574 2888630 + Bma018815.1 Bma04g00357 80726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00357 990 Gene3D - 485 722 IPR014721 -
Bma04g00357 990 Pfam GHMP kinases N terminal domain 634 700 IPR006204 GO:0005524
Bma04g00357 990 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 22 333 - -
Bma04g00357 990 Gene3D - 830 960 IPR036554 -
Bma04g00357 990 PRINTS Mevalonate kinase family signature 923 940 - -
Bma04g00357 990 PRINTS Mevalonate kinase family signature 502 526 - -
Bma04g00357 990 PRINTS Mevalonate kinase family signature 681 700 - -
Bma04g00357 990 PRINTS Mevalonate kinase family signature 638 660 - -
Bma04g00357 990 Pfam GHMP kinases C terminal 866 957 IPR013750 -
Bma04g00357 990 Pfam Galactokinase galactose-binding signature 494 535 IPR019539 -
Bma04g00357 990 SUPERFAMILY Ribosomal protein S5 domain 2-like 495 715 IPR020568 -
Bma04g00357 990 PANTHER L-ARABINOKINASE 16 983 - -
Bma04g00357 990 PIRSF Gal_kin_glcsltr 1 988 IPR012369 -
Bma04g00357 990 Gene3D Glycogen Phosphorylase B; 21 226 - -
Bma04g00357 990 PANTHER MEVALONATE KINASE/GALACTOKINASE 16 983 - -
Bma04g00357 990 SUPERFAMILY GHMP Kinase, C-terminal domain 725 976 IPR036554 -
Bma04g00357 990 Gene3D Glycogen Phosphorylase B; 227 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00357 K12446 E2.7.1.46; L-arabinokinase [EC:2.7.1.46] - cpap:110808245 1669.83
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g238 . . . . . . Bma04g00357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma09g00543 . . . . . . . . . . . . . . . . . . . . . . Cme04g00314
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003094 1 4 1 1 1 2 2 2 2 2 2 2 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 1 1 2 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00357 Bma_Chr04 FPKM 13.890085 14.127481 10.774831 10.791878 18.367956 17.866312 19.107937 11.694654 11.128678 9.658401