Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00358 ATGGCTCCGAGATTAAATTTTTCCGGCTGGTGGGGGAAGGACTCACTGAAAGGAACGCCGGTGGTTGTGACAATGGAGAAACCGAATTTCTCGGTGGTTGAAATCGACGGCCCTGACTCTGCATTTCGGCCGATGGACAAGAGCCGGGGGAAAAATGCTAAACAAGTGACTTGGGTATTGCTTCTCAAAGCTCATCGAGCTGTCGGTTGCATAGCCTGGCTCGCCACTGTCCTCTGGGCATTGCTTGGAACCATTAAGAAGAGATTGATTTACAGACAAGGCGTGGCTGTTGAGAGTGGGAAAGTGGAAAAGGGAAAGTTGCTGTTTAGAGTCATTAGAGGATTCTTAGTAACTTCCTTGATAGTTTTGGCTTTTGAGGTTGTCGCTTATTACAACGGTTGGAACTATTTTTCCAATCCAAATCTGCACATTCCACAGGCTTCTGATTTGCAAGACTTTCTTCATATGGTCTATTTGATCTGGTTAAACTTTAGAGCAAATTACATTGCCCCTCCAATTCAGGCGCTCTCCAAATTCTGTGTTGTTCTGTTCCTCATCCAATCTTTGGATCGTCTGATACTTAGCTTGGGTTGCTTCTGGATAAAGTACAAGAAAATTAAGCCCAAAATAGAGGATGATCCTCTCAAGTCGAATGATGTCGAGGGAGCTGGTTATGACTACCCAATGGTTCTTGTTCAAATACCAATGTGTAACGAGAAAGAGGTTTATGAGCAATCTATCTCTGCAGTATGTCAGATGGATTGGCCAAAGGATCGTATGCTAATTCAAGTTCTCGATGATTCAGACGATGAAAACATCCAATGGTTGATCAACGCCGAGGTTAATCAATGGAGCCAAAAGGGTATCAATATAATCTATAGGCATCGGTTGATAAGAACTGGTTATAAAGCTGGAAATCTCAAGTCTGCAATGAGCTGTGATTACGTCAAAGGCTATGAGTTTGTCGCCATCTTCGATGCCGATTTCCAACCCAATCCCGATTTTCTCAAACAAACAGTACCCCATTTCAAGGACAAACCAGAGCTCGGTTTGGTTCAAGCACGTTGGGCGTTTGTAAACAAGGACGAGAACTTGTTGACTCGTCTTCAAAACATAAATCTGTGTTTCCACTTTGAGGTAGAACAGCAGGTTAATGGCGTTTTTCTTAGTTTCTTTGGCTTCAATGGCACTGCTGGTGTTTGGAGGATCAAAGCACTTGAAGAGTCTGGAGGATGGCTTGAAAGGACGACTGTGGAGGATATGGACATAGCTGTCAGGGCCCATCTCAATGGCTGGAAATTCATTTTTCTTAATGATGTCAAGGTCATTTGTGAGGTGCCTGAATCGTATGAAGCTTACCGGAAGCAGCAGCATCGGTGGCATTCCGGTCCGATGCAACTATTTCGATTGTGTCTTCCAACAATCATAACTTCTAAGATATCGGCATGGAAAAAAGCTAATATGATCCTACTGTTCTTTCTGTTGAGGAAGCTAATCCTTCCCTTTTACTCATTCACATTGTTCTGTATAATTCTTCCTTTAACCATGTTCGTCCCGGAGGCCGAGCTTCCCGTTTGGGTAATCTGTTACATACCGGCTTTTACGTCATTCCTCAACATCCTTCCGGCACCCAAATCATTCCCCTTTATAGTCCCTTATCTCCTATTTGAAAACACCATGTCAGTCACCAAATTCAACGCCATGGTTTCTGGATTATTCCAATTAGGCAGCTCTTACGAGTGGGTCGTCACAAAAAAGGCTGGCCGGTCATCGGAATCTGACTTGATTGCAGCCGCGGAGAGGGAGTCAAAGCTAATGATTCAGCCACAAATTTGTAGAGGTGCCTCTGATGGCGAGCTCTCTGAGCTACACATGTTCAAGGAAAAGAATGAAGCAGCTTCTGCTCCCATTAAGAAAACAAATAAGATATACAAGAAAGAGCTTGCTTTGGCATTCCTTTTGCTCACGGCTTCAATTAGGAGCCTTTTGTCTGCTCAAGGAGTGCATTTCTACTTCTTGCTCTTTCAAGGAGTGACTTTTCTCCTCGTTGGCCTTGATCTTATTGGGGAACAAATGAGCCCATAG 2085 43.88 MAPRLNFSGWWGKDSLKGTPVVVTMEKPNFSVVEIDGPDSAFRPMDKSRGKNAKQVTWVLLLKAHRAVGCIAWLATVLWALLGTIKKRLIYRQGVAVESGKVEKGKLLFRVIRGFLVTSLIVLAFEVVAYYNGWNYFSNPNLHIPQASDLQDFLHMVYLIWLNFRANYIAPPIQALSKFCVVLFLIQSLDRLILSLGCFWIKYKKIKPKIEDDPLKSNDVEGAGYDYPMVLVQIPMCNEKEVYEQSISAVCQMDWPKDRMLIQVLDDSDDENIQWLINAEVNQWSQKGINIIYRHRLIRTGYKAGNLKSAMSCDYVKGYEFVAIFDADFQPNPDFLKQTVPHFKDKPELGLVQARWAFVNKDENLLTRLQNINLCFHFEVEQQVNGVFLSFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFIFLNDVKVICEVPESYEAYRKQQHRWHSGPMQLFRLCLPTIITSKISAWKKANMILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWVICYIPAFTSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWVVTKKAGRSSESDLIAAAERESKLMIQPQICRGASDGELSELHMFKEKNEAASAPIKKTNKIYKKELALAFLLLTASIRSLLSAQGVHFYFLLFQGVTFLLVGLDLIGEQMSP 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2891941 2894601 + Bma018816.1 Bma04g00358 80727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00358 694 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 447 IPR029044 -
Bma04g00358 694 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 5-RELATED 1 693 - -
Bma04g00358 694 PANTHER - 1 693 - -
Bma04g00358 694 SUPERFAMILY Nucleotide-diphospho-sugar transferases 230 531 IPR029044 -
Bma04g00358 694 Pfam Glycosyl transferase family group 2 322 517 IPR001173 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00358 - - - qsu:111987347 1238.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02238 Bma-Chr1:79515244 Bma04g00358 Bma-Chr4:2891941 0 dispersed
Bma04g00358 Bma-Chr4:2891941 Bma15g00649 Bma-Chr15:9401515 0 dispersed
Bma04g00358 Bma-Chr4:2891941 Bma09g00585 Bma-Chr9:42932507 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00530 CCT 217 396 REM Transcription Factor Family AT1G49480 62.8 1.9e-55 212.6
Bma05g00088 . 1 133 REM Transcription Factor Family AT4G33280 53.0 6.9e-40 161.8
Bma04g00358 . 1 693 REM Transcription Factor Family AT2G24630 76.8 0.0e+00 1090.1
Bma01g02238 CCT 1 708 REM Transcription Factor Family AT2G24630 65.0 1.5e-263 905.6
Bma09g00585 . 5 690 REM Transcription Factor Family AT2G24630 62.0 1.2e-244 842.8
Bma15g00649 . 5 685 REM Transcription Factor Family AT2G24630 61.5 2.1e-241 832.0
Bma01g02228 . 1 510 REM Transcription Factor Family AT2G24630 62.8 2.3e-184 642.5
Bma04g00358 . 1 693 REM Transcription Factor Family AT2G24630 76.8 0.0e+00 1090.1
Bma01g02238 CCT 1 708 REM Transcription Factor Family AT2G24630 65.0 1.5e-263 905.6
Bma09g00585 . 5 690 REM Transcription Factor Family AT2G24630 62.0 1.2e-244 842.8
Bma15g00649 . 5 685 REM Transcription Factor Family AT2G24630 61.5 2.1e-241 832.0
Bma01g02228 . 1 510 REM Transcription Factor Family AT2G24630 62.8 2.3e-184 642.5
Bma04g00358 . 1 693 REM Transcription Factor Family AT2G24630 76.8 0.0e+00 1090.1
Bma01g02238 CCT 1 708 REM Transcription Factor Family AT2G24630 65.0 1.5e-263 905.6
Bma09g00585 . 5 690 REM Transcription Factor Family AT2G24630 62.0 1.2e-244 842.8
Bma15g00649 . 5 685 REM Transcription Factor Family AT2G24630 61.5 2.1e-241 832.0
Bma01g02228 . 1 510 REM Transcription Factor Family AT2G24630 62.8 2.3e-184 642.5
Bma05g00088 . 1 133 REM Transcription Factor Family AT4G33280 53.0 6.9e-40 161.8
Bma03g00530 CCT 217 396 REM Transcription Factor Family AT1G49480 62.8 1.9e-55 212.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00358 Bma_Chr04 FPKM 23.435389 28.938217 22.610813 21.269146 22.578096 24.030888 20.672253 22.14879 21.247955 19.545858