Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00366 ATGCAAGGAAATTTATCACAAGGACTCGGTCCGGGTGGACACTCCGGTCATCATCAAGCACAACATCCACTCGGCCTGCACCAGCTTCATCATCTACAAAGTGGCCAAGGGTCATTGGTCCATCCTTCGGTTCAAGATAGTTTTCCTTTGACAATGGGAACCTTTCAGAACTGTGATCGTGTCATTTCAAAGGGGGATTACAGTAAAGGAGAAAGAATCCAAAACTTGGCCAGCGATGACGAAGAGCTAAGCTTTGCCGAAGAGGGTGTTGATGGTCAGAACGATGGCTGTAAGGGGAAGAAGGGATCGATGTGGCAGCGAGTGAAGTGGACTGATAAAATGGTGAGACTTCTGATTACTTCGGTTTCTTATGTCGGAGACGATGCTGCTTCGGATTGTGGAGGGGTTGGGAAAAGAAAATTTGCAGTTTTACAGAAAAAGGGTAAGTGGAAATCGATTTCTAAGGTCATGGCTGAAAGGGGTTTTCATGTCTCCCCTCAGCAGTGTGAGGATAAATTTAATGACCTAAACAAAAGGTATAAGAAACTCATCGACATGGTCGGAAGGGGCACTTCTTGTCAGGTTGTCGAGGATCCTAGGCTTCTAGATGTTTTAGATTACTTATCAGAGAAAGAAAAGGAAGATGTTAGAAAAATCTTGAGCTCAAAGCACATGTTTTACCAAGAGATGTGTTCTTACCATAATGTTAATCGACTGCATCTGCCCCACGATCCAGCTTTGCAGAGATCATTACACTTGGCTCTGAGAAGTAAAGAAGATCATGATAATGATGATATTAGGAGACAGCAGCCTGATGATTTTGATGATGATGATCAAGAAATGGAAACAGACGATGGTGAGGATTTTAAGGAGAATGATGCTTCTCGTGTAGATAAACGGGCAATGTGCGGGCTTTTAGATGGCTCTGAAAAAAGAATGAGGTTCGGCCAAGGCCATGAGGAAGCAATTTACGGTAGTTCCTTGAGCCCCCACGATGGAAATAGAGTTTCCTCACATATGCAAACTTCCCAAGTTGATACGAATTCATGGTCTCAAAAGCAGTGGATTAAATTTCGGTCGATTCAGTTAGAAGAACAAAAGCTTCAGATCCAAATCGAGATGTTGGAATTGGAGAAACAAAGGTTCAAATGGCAGAGATTCAGCAAGAAACGAGACCATGAGTTGGAAAAACTGCGGATGGAAAACGAGAGGATGAAGCTCGAGAACGAGCGAATGGTCTTCGAAATAAAACAAAAGGAAATGACTGCTAACTTCAACCAATAA 1284 42.99 MQGNLSQGLGPGGHSGHHQAQHPLGLHQLHHLQSGQGSLVHPSVQDSFPLTMGTFQNCDRVISKGDYSKGERIQNLASDDEELSFAEEGVDGQNDGCKGKKGSMWQRVKWTDKMVRLLITSVSYVGDDAASDCGGVGKRKFAVLQKKGKWKSISKVMAERGFHVSPQQCEDKFNDLNKRYKKLIDMVGRGTSCQVVEDPRLLDVLDYLSEKEKEDVRKILSSKHMFYQEMCSYHNVNRLHLPHDPALQRSLHLALRSKEDHDNDDIRRQQPDDFDDDDQEMETDDGEDFKENDASRVDKRAMCGLLDGSEKRMRFGQGHEEAIYGSSLSPHDGNRVSSHMQTSQVDTNSWSQKQWIKFRSIQLEEQKLQIQIEMLELEKQRFKWQRFSKKRDHELEKLRMENERMKLENERMVFEIKQKEMTANFNQ 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2936433 2937716 + Bma018824.1 Bma04g00366 80735

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00366 427 Coils Coil 358 385 - -
Bma04g00366 427 MobiDBLite consensus disorder prediction 257 294 - -
Bma04g00366 427 PANTHER FACTOR, PUTATIVE-RELATED 14 426 - -
Bma04g00366 427 MobiDBLite consensus disorder prediction 257 274 - -
Bma04g00366 427 Coils Coil 390 417 - -
Bma04g00366 427 MobiDBLite consensus disorder prediction 1 21 - -
Bma04g00366 427 Pfam Myb/SANT-like DNA-binding domain 107 232 IPR044822 -
Bma04g00366 427 Gene3D - 110 182 - -
Bma04g00366 427 PANTHER F16F4.11 PROTEIN-RELATED 14 426 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00366 - - - tcc:18592603 543.117
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00366 Bma-Chr4:2936433 Bma07g01406 Bma-Chr7:49844868 3.61E-59 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1382 . Blo12g00789 . Bda03g00389 . Bpe04g00349 Bma04g00366 . Cmo04g02563 Cmo15g00604 . . . . Sed11g1351 . Cpe13g00682 Bhi04g01778 Tan11g1141 Cmetu03g2202 . Hepe02g2794 . Lcy10g1351 Cla08g00710 Cam08g1138 Cec08g0727 Cco08g0835 Clacu08g0846 . Cre08g0647 Cone4ag1503 . Cone17ag0787 Cone20ag0381 . . . Cme03g00318 . . . . . . . . . . . . . Car04g02356 Car15g00553 Cpe01g02116 . . . . . . . . . . . . . . . . . Chy03g00512 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003875 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 3 1 3 3 1 3 1 1 2 2 0 2 2 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57141 PF13837 Myb_DNA-bind_4 5.60E-22 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00366 Bma_Chr04 FPKM 9.97862 11.69959 10.334605 10.151608 15.064247 17.480883 15.916262 17.888233 16.81036 16.695171