Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00369 ATGTCATTCCGCAGCATAGTCCGGGACGTTAGGGATGGATTTGGAAGCTTTTCGAGGCGTAGTTTTGAGGTGGGAATCCCAGGTCACCATAGAGGGAAATCCCACGGGGCCGTCCATGAGATGACCGACCACCCTCTTGTAATCCAAACTAGTCCTTGGGCTAGTCTCCCAACAGAACTACTGAGGGATGTTGTCAAAAGATTGGAAGAGAGTGAGAGTACTTGGCCTTCACGGAAGCATGTTGTCTCCTGTGCTTCTGTGTGTAGGTCATGGAGAGAAATGTGCCAGGAAATTGTCCAAAATCCGGAGTTTTCTGGCAAGATCACGTTTCCAGTCTCCTTGAAGCAGCCTGGGTCTCGAGACGGAACAATTCAGTGCTTCATTAAGAGGGATAAATCTAATTTAACTTACCGGCTTTTCCTTTGCCTTAGTCCTGTTGTGGCAACTTTCTTTATATTGTTTATGGATCTGAATTTATCAATGTTTGATATGTTTGCAGCATTACTTGTTGAGAATGGAAAATTTCTCCTTTCAGCGAAACGAACGAGAAGAACTACCTGCACCGAATACGTGATCTCCATGGATGCTGATAATATATCAAGATCAAGCTGCACATATATCGGAAAGATAAGGTCAAATCTTCTGGGGACGAAATTCTTAATATACGATACGCAGCCTCCTTACAACAGCGTGCAACATTCCCCACCAGGTCGAAGCCAAAGACTTACCTCGAAGAAAATTTCTCCCAAAGTCCCTACAGGTAATTACAATATTGCCGAGGTTACATACGAGCTGAATGTTTTAGGGACGCGGGGCCCACGGAGAATGCACTGCACCATCCATTCGATCCCCGTGTCGGCCATCGAGCCAGGAGGCACCATCCCCGGCCAGCCCGAGCTCCTCCCCCGTTCCCTCGAGGACTCCTTCCGGAGCATTTCCTTCTCAAAGTCGATCGATAACAGCACCGAGTTTAGCAGTGCTCGCTTCTCTGACATTGTGAGGCTGAATGAAGATCAAGAAGAACATGAAGAGGATGAGTCGAAAGAAAAGATCAGACCCTTAATTCTCAAGAACAAATCCCCTCGCTGGCATGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTGACTGTGGCCTCGGTCAAAAACTTTCAGCTGATAGCGGCTGAGGAATCTCCTCCTGCTCAGCCTGTCCAGCCAGACCATGACAAGATAATTCTTCAGTTTGGCAAGGTTGGAAAAGATCTGTTTACCATGGATTATAGATATCCTTTGTCTGCATTTCAAGCTTTTGCCCTCTGTTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG 1344 47.1 MSFRSIVRDVRDGFGSFSRRSFEVGIPGHHRGKSHGAVHEMTDHPLVIQTSPWASLPTELLRDVVKRLEESESTWPSRKHVVSCASVCRSWREMCQEIVQNPEFSGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYRLFLCLSPVVATFFILFMDLNLSMFDMFAALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSCTYIGKIRSNLLGTKFLIYDTQPPYNSVQHSPPGRSQRLTSKKISPKVPTGNYNIAEVTYELNVLGTRGPRRMHCTIHSIPVSAIEPGGTIPGQPELLPRSLEDSFRSISFSKSIDNSTEFSSARFSDIVRLNEDQEEHEEDESKEKIRPLILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAEESPPAQPVQPDHDKIILQFGKVGKDLFTMDYRYPLSAFQAFALCLSSFDTKLACE 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2965742 2969068 + Bma018827.1 Bma04g00369 80738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00369 447 SUPERFAMILY Tubby C-terminal domain-like 102 447 IPR025659 -
Bma04g00369 447 PRINTS Tubby superfamily signature 425 447 IPR000007 -
Bma04g00369 447 PRINTS Tubby superfamily signature 255 282 IPR000007 -
Bma04g00369 447 PRINTS Tubby superfamily signature 206 230 IPR000007 -
Bma04g00369 447 PRINTS Tubby superfamily signature 356 373 IPR000007 -
Bma04g00369 447 PRINTS Tubby superfamily signature 374 390 IPR000007 -
Bma04g00369 447 PRINTS Tubby superfamily signature 190 206 IPR000007 -
Bma04g00369 447 PRINTS Tubby superfamily signature 404 423 IPR000007 -
Bma04g00369 447 Gene3D Tubby Protein; Chain A 112 441 IPR025659 -
Bma04g00369 447 Gene3D - 48 101 - -
Bma04g00369 447 ProSitePatterns Tub family signature 1. 374 387 IPR018066 -
Bma04g00369 447 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 447 - -
Bma04g00369 447 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Bma04g00369 447 Pfam F-box domain 53 101 IPR001810 GO:0005515
Bma04g00369 447 PANTHER TUBBY-RELATED 1 447 - -
Bma04g00369 447 Pfam Tub family 114 442 IPR000007 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02507 Bma04g00369 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00369 Bma-Chr4:2965742 Bma05g00558 Bma-Chr5:31534520 0 dispersed
Bma12g01166 Bma-Chr12:44318478 Bma04g00369 Bma-Chr4:2965742 0 transposed
Bma01g02507 Bma-Chr1:82764747 Bma04g00369 Bma-Chr4:2965742 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57144 PF01167 Tub 5.90E-108 CL0395 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00369 K19600 - qsu:111992792 719.539