Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g00369 | ATGTCATTCCGCAGCATAGTCCGGGACGTTAGGGATGGATTTGGAAGCTTTTCGAGGCGTAGTTTTGAGGTGGGAATCCCAGGTCACCATAGAGGGAAATCCCACGGGGCCGTCCATGAGATGACCGACCACCCTCTTGTAATCCAAACTAGTCCTTGGGCTAGTCTCCCAACAGAACTACTGAGGGATGTTGTCAAAAGATTGGAAGAGAGTGAGAGTACTTGGCCTTCACGGAAGCATGTTGTCTCCTGTGCTTCTGTGTGTAGGTCATGGAGAGAAATGTGCCAGGAAATTGTCCAAAATCCGGAGTTTTCTGGCAAGATCACGTTTCCAGTCTCCTTGAAGCAGCCTGGGTCTCGAGACGGAACAATTCAGTGCTTCATTAAGAGGGATAAATCTAATTTAACTTACCGGCTTTTCCTTTGCCTTAGTCCTGTTGTGGCAACTTTCTTTATATTGTTTATGGATCTGAATTTATCAATGTTTGATATGTTTGCAGCATTACTTGTTGAGAATGGAAAATTTCTCCTTTCAGCGAAACGAACGAGAAGAACTACCTGCACCGAATACGTGATCTCCATGGATGCTGATAATATATCAAGATCAAGCTGCACATATATCGGAAAGATAAGGTCAAATCTTCTGGGGACGAAATTCTTAATATACGATACGCAGCCTCCTTACAACAGCGTGCAACATTCCCCACCAGGTCGAAGCCAAAGACTTACCTCGAAGAAAATTTCTCCCAAAGTCCCTACAGGTAATTACAATATTGCCGAGGTTACATACGAGCTGAATGTTTTAGGGACGCGGGGCCCACGGAGAATGCACTGCACCATCCATTCGATCCCCGTGTCGGCCATCGAGCCAGGAGGCACCATCCCCGGCCAGCCCGAGCTCCTCCCCCGTTCCCTCGAGGACTCCTTCCGGAGCATTTCCTTCTCAAAGTCGATCGATAACAGCACCGAGTTTAGCAGTGCTCGCTTCTCTGACATTGTGAGGCTGAATGAAGATCAAGAAGAACATGAAGAGGATGAGTCGAAAGAAAAGATCAGACCCTTAATTCTCAAGAACAAATCCCCTCGCTGGCATGAACAGTTGCAGTGTTGGTGCCTTAACTTCCGAGGGCGGGTGACTGTGGCCTCGGTCAAAAACTTTCAGCTGATAGCGGCTGAGGAATCTCCTCCTGCTCAGCCTGTCCAGCCAGACCATGACAAGATAATTCTTCAGTTTGGCAAGGTTGGAAAAGATCTGTTTACCATGGATTATAGATATCCTTTGTCTGCATTTCAAGCTTTTGCCCTCTGTTTGAGCAGCTTCGACACGAAATTGGCTTGTGAATAG | 1344 | 47.1 | MSFRSIVRDVRDGFGSFSRRSFEVGIPGHHRGKSHGAVHEMTDHPLVIQTSPWASLPTELLRDVVKRLEESESTWPSRKHVVSCASVCRSWREMCQEIVQNPEFSGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYRLFLCLSPVVATFFILFMDLNLSMFDMFAALLVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSCTYIGKIRSNLLGTKFLIYDTQPPYNSVQHSPPGRSQRLTSKKISPKVPTGNYNIAEVTYELNVLGTRGPRRMHCTIHSIPVSAIEPGGTIPGQPELLPRSLEDSFRSISFSKSIDNSTEFSSARFSDIVRLNEDQEEHEEDESKEKIRPLILKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAEESPPAQPVQPDHDKIILQFGKVGKDLFTMDYRYPLSAFQAFALCLSSFDTKLACE | 447 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 2965742 | 2969068 | + | Bma018827.1 | Bma04g00369 | 80738 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g00369 | 447 | SUPERFAMILY | Tubby C-terminal domain-like | 102 | 447 | IPR025659 | - | |
Bma04g00369 | 447 | PRINTS | Tubby superfamily signature | 425 | 447 | IPR000007 | - | |
Bma04g00369 | 447 | PRINTS | Tubby superfamily signature | 255 | 282 | IPR000007 | - | |
Bma04g00369 | 447 | PRINTS | Tubby superfamily signature | 206 | 230 | IPR000007 | - | |
Bma04g00369 | 447 | PRINTS | Tubby superfamily signature | 356 | 373 | IPR000007 | - | |
Bma04g00369 | 447 | PRINTS | Tubby superfamily signature | 374 | 390 | IPR000007 | - | |
Bma04g00369 | 447 | PRINTS | Tubby superfamily signature | 190 | 206 | IPR000007 | - | |
Bma04g00369 | 447 | PRINTS | Tubby superfamily signature | 404 | 423 | IPR000007 | - | |
Bma04g00369 | 447 | Gene3D | Tubby Protein; Chain A | 112 | 441 | IPR025659 | - | |
Bma04g00369 | 447 | Gene3D | - | 48 | 101 | - | - | |
Bma04g00369 | 447 | ProSitePatterns | Tub family signature 1. | 374 | 387 | IPR018066 | - | |
Bma04g00369 | 447 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 10-RELATED | 1 | 447 | - | - | |
Bma04g00369 | 447 | SUPERFAMILY | F-box domain | 48 | 96 | IPR036047 | GO:0005515 | |
Bma04g00369 | 447 | Pfam | F-box domain | 53 | 101 | IPR001810 | GO:0005515 | |
Bma04g00369 | 447 | PANTHER | TUBBY-RELATED | 1 | 447 | - | - | |
Bma04g00369 | 447 | Pfam | Tub family | 114 | 442 | IPR000007 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g02507 | Bma04g00369 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g00369 | Bma-Chr4:2965742 | Bma05g00558 | Bma-Chr5:31534520 | 0 | dispersed | |
Bma12g01166 | Bma-Chr12:44318478 | Bma04g00369 | Bma-Chr4:2965742 | 0 | transposed | |
Bma01g02507 | Bma-Chr1:82764747 | Bma04g00369 | Bma-Chr4:2965742 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57144 | PF01167 | Tub | 5.90E-108 | CL0395 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g00369 | K19600 | - | qsu:111992792 | 719.539 |