Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00370 ATGCCATCGACCGATTGCCAGGGTTCTTCTGCTAGTTTCGGTGGTTTTGGTCGATCAATTTTGAGTTTTCGGCGTGACCAGATTCACTCGATGGAAGCTTCGCACGAGGCCTCGTCAATGGAGCTCGATCTCGATTCTTTTCAGAAGCAAGTGACGGACCGGTTTCTCGAACTCTCCTCCATTGGCAACGACGATCTGCTTTCTATCTCGTGGATTCTGAAGCTTCTCGATGCTTTCCTTTCCTGCCAAGAGGAGTTCAGAAGCATTCTATTCACCTACAGATCTCAAATCGTCAAGCCTCCAATGGATCGATTGATTGCCGATTATCTGGATCGAAGCGTCAAGACGCTTGACGTCTGTAATGCTGTCCGGGATGGGATTGATCAACTCAGGCAATGGCAGAAGCTGTTAGAGATCGTACTCATCGCGTTGAACGGCAAGAATAATCGGAAAACTCTCTGCGAAGGCCAATTTCGCCGCGCCAAGAAGGCCCTGGTCGATTTAGCTATATTCATGCTTGACGATAAGGATTCAAACCCCGCGATTGTTTCCCACAGAAACCGATCGTTTGGCCGACACAATGCCTCCCGAGATAATCGATCTTCTTCAGGACATTCTCGTTCCCTTTCTTGGAGCGTTTCGAGAACGTGGTCTGCTGCTAGGCAGCTCCAAGCAATTGGAAACAATCTGGCTTATCCAAGGGCAAGCGATCTCCTGTCAACGAATGGCTTCGCATCCCCTGTTTACACTATGAACATGGTTCTTTTGTTCGTAACGTGGGCTTTAGTTGCCGCGATTCCTTGCCAAGACCGGGGTCTACAGGTTCATTTTTCTGTTCCCCGGCAATTCTCGTGGGGGGCTCCGATGATTGCTCTACACGATCGAATCATGGAGGAATCCAAGAAGCGAGAGAGGAAAAATACTTGTGGGTTATTGAAGGAGATTCATCAGCTAGAGAAATGCACTCGCGTGATGAACGAACAGCTAGAGTTTCCGTTGACGGAAGAGAAGGAAGAAGAGGTGAAGCAGAGAGTGGAAGAGCTATCAAAAGTTTGTGACGCCATGAAAGTCGGCCTGGACCCTCTGGAGCGGCAGGTGAGAGAGGTTTTCCGCCGGATAGTGCGCAGCCGAACCGACGGGAATTCCTGA 1149 49.7 MPSTDCQGSSASFGGFGRSILSFRRDQIHSMEASHEASSMELDLDSFQKQVTDRFLELSSIGNDDLLSISWILKLLDAFLSCQEEFRSILFTYRSQIVKPPMDRLIADYLDRSVKTLDVCNAVRDGIDQLRQWQKLLEIVLIALNGKNNRKTLCEGQFRRAKKALVDLAIFMLDDKDSNPAIVSHRNRSFGRHNASRDNRSSSGHSRSLSWSVSRTWSAARQLQAIGNNLAYPRASDLLSTNGFASPVYTMNMVLLFVTWALVAAIPCQDRGLQVHFSVPRQFSWGAPMIALHDRIMEESKKRERKNTCGLLKEIHQLEKCTRVMNEQLEFPLTEEKEEEVKQRVEELSKVCDAMKVGLDPLERQVREVFRRIVRSRTDGNS 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2973219 2974367 + Bma018828.1 Bma04g00370 80739

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00370 382 PANTHER OS04G0688000 PROTEIN 1 380 - -
Bma04g00370 382 MobiDBLite consensus disorder prediction 184 208 - -
Bma04g00370 382 PANTHER BPS1-LIKE PROTEIN 1 380 - -
Bma04g00370 382 Pfam Protein ROH1-like 12 379 IPR008511 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00370 - - - csv:101202838 486.878
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02508 Bma04g00370 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00370 Bma-Chr4:2973219 Bma05g00830 Bma-Chr5:45688591 9.47E-109 dispersed
Bma01g02508 Bma-Chr1:82771294 Bma04g00370 Bma-Chr4:2973219 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1374 Blo01g01729 Blo12g00785 . Bda03g00392 Bpe02g00212 Bpe04g00354 Bma04g00370 Bma01g02508 . . . . . . . Cpe06g00909 . . . . . . . . . . . . . . . . . Cone17ag0783 . . . . . . . Bda11g00873 . . . . . . . . . . . . . . Bhi09g01534 . . . . Mch11g1487 . . . . . . . . . . . Cme01g00793
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001452 2 8 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 3 2 2 2 2 2 2 2 1 2 4 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00370 Bma_Chr04 FPKM 40.977081 47.413235 24.150494 23.598644 19.930601 16.842621 16.023851 30.179398 29.57905 32.168354