Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00373 ATGGCGGTTTCCGTTTCTGCATCAACGGCTCCGACGCTGAACTTTTATTCTTTGAATCGCGTAGCTCCTGCTTCTTCCTTTTCTCCGTTGAAACTATCTGCTTCATTCTCGCCTGTTCGATTTCCATGGCCTTCCCGTGTTCGAGATGGAAAGAAAGGGGTTACACATTCGTTTCGACCTAGGATTCTTCCGCTGGTCAAAGCAAAGAAGCAAACTTTCTCCTCTTTTGATGATTTACTGGCAGAGTCTGACAAACCTGTTTTGGTTGACTTCTATGCAACTTGGTGTGGTCCATGTCAATACATGGTTCCTGTTCTCAAGGAAGTAGGCTCTAAGCTAAAAGATACAATTCAGGTGGTCAAAATTGATACTGAAAAATATCCTAGTGTTGCTGCGAAATACAATGTAGAAGCCTTGCCTACTTTCATCATTTTCAAGGATGGCAAACCATATGACCGCTTTGAGGGTGCTTTAACTGCAAATCAGCTCATCGAACGAATAGAAAATAGTTTGAAGGTGAAGCAGTAG 528 42.8 MAVSVSASTAPTLNFYSLNRVAPASSFSPLKLSASFSPVRFPWPSRVRDGKKGVTHSFRPRILPLVKAKKQTFSSFDDLLAESDKPVLVDFYATWCGPCQYMVPVLKEVGSKLKDTIQVVKIDTEKYPSVAAKYNVEALPTFIIFKDGKPYDRFEGALTANQLIERIENSLKVKQ 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2984589 2986804 + Bma018831.1 Bma04g00373 80742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00373 175 PANTHER GEO12009P1 22 175 - -
Bma04g00373 175 SUPERFAMILY Thioredoxin-like 72 172 IPR036249 -
Bma04g00373 175 TIGRFAM thioredoxin: thioredoxin 73 170 IPR005746 GO:0015035
Bma04g00373 175 PRINTS Thioredoxin family signature 95 104 - -
Bma04g00373 175 PRINTS Thioredoxin family signature 87 95 - -
Bma04g00373 175 PRINTS Thioredoxin family signature 135 146 - -
Bma04g00373 175 ProSiteProfiles Thioredoxin domain profile. 30 172 IPR013766 -
Bma04g00373 175 PANTHER THIOREDOXIN Y2, CHLOROPLASTIC 22 175 - -
Bma04g00373 175 CDD TRX_family 74 168 - -
Bma04g00373 175 ProSitePatterns Thioredoxin family active site. 88 106 IPR017937 -
Bma04g00373 175 Gene3D Glutaredoxin 69 175 - -
Bma04g00373 175 Pfam Thioredoxin 70 168 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00373 - - - jre:109011407 228.794
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00006 Bma-Chr3:141410 Bma04g00373 Bma-Chr4:2984589 1.53E-25 dispersed
Bma03g00014 Bma-Chr3:215628 Bma04g00373 Bma-Chr4:2984589 4.54E-11 dispersed
Bma04g00373 Bma-Chr4:2984589 Bma13g00978 Bma-Chr13:41621532 1.84E-19 dispersed
Bma04g00373 Bma-Chr4:2984589 Bma07g01083 Bma-Chr7:43519757 1.55E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1363 . Blo12g00783 . Bda03g00395 . Bpe04g00357 Bma04g00373 . . . . Cma09g01174 . . . . . . . . . . . . . . . . . . . . . . Cone20ag0373 . . . . . . . . . . . . . . Cmo09g01181 . . . . . . . . . . . . . . . . . . . . . . Chy03g00253 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013186 1 1 1 1 1 0 2 0 0 1 1 0 2 1 1 2 0 1 1 0 0 1 1 1 1 1 1 1 2 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00373 Bma_Chr04 FPKM 8.496614 8.022826 8.539444 8.700932 30.312178 25.705219 32.048698 10.616499 10.253417 13.005851