Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00375 ATGTCTTTATCGGGGAATGACGACAATGACGAGGAGATTTCAATGAGAATTACGGACGGCGCTAAGGTGCTAGCTTCTTTCAGAAGGAGAGACTCGTTGGATATCCAGAATGATACGGCATCTGAAGAGGCGGTTCTGTGTTTGGTGATGACTAACGCGGTGGAGGTACTGGATAGCGAGGGGCGCGCTCTAGGAATTGCGGTGTATAATGCAAAGAGACGTTCAGAATTATGGTCAAAATATCATTTTCTCTGTTCTTGTCAGCGATGCTGTGCAACACCCATGAGTTATGTGGACTATGTTTTGCAAGAATTTTCTTCTCCTTATCTAGAATTGTCTAGTTCATCTCCCAATAGTGCAGTCTATAGTATGAAAATTGAAAGGTTTACCGATTATGTTGATGATGTGATAACTGAGTATCCATCAGTTGGGGATCCTGCAATGTGTTGTCACAATCTTGAGAAAGTTCTTGCATTAGGTTTCTGTGATGAGGACTTACAACAGAAGCAAAGCAGGCAGTTGCCTCCTCTCAAGTTGCATCCCCATCACAACCTGTCTCTGGACATTTACACTGCTCTGTCTTCAGCTTATCAAGTTTATTTAACTAGCTTAATGGCCTCATCTTCTAAAGGAGATGACCATCTATTCGAGGCTTTTGAAATGCATAGGATAAGTACCGCATATTCCTTATTACTTGCAAGTGCTACCCATCATCTTTTTCAATCTGAACCATCTCTGATTGCATCTGCTGCAAATTTTTGGACCAGTTCAGGAGAATCTTCGTTGAACCTTTCTAGAAGCTCACAATGGGTCAAATTCTTGGGAAGGAACTATCCTCTTCCAGATCTTTCTTTAATGGTAAAAAATTTGTGCTCTGGATGCACTTGGGTCGACAAGCTTAGCAGTTGTAATTTTTGTTGTCGAGCACTATATGCAGAGTGTCAAGATGTATCCAATGAGTTTCTTAATTGCGTTACTAATTTGTCAAAAAACGTTTGGGGTTTTCTTTCTCGGGGTCACCCTTATTTGACTGTCATCAAAAGTTTATTTGATCTGGGGTGTCATGAAAAAATTTCATGTTCTGCTCCAATGGATTTTGAGGCTCATAGCACTGATTATTTGGAATCTTACTGGGGTACTAAGAATGATTCTTGTGTGAGTAAATATAAAAGATGCTTGGAGCAAGTGAGGATATCCATCTTTTGGATTGGTGTTCACTGTTTATTATAG 1230 40.33 MSLSGNDDNDEEISMRITDGAKVLASFRRRDSLDIQNDTASEEAVLCLVMTNAVEVLDSEGRALGIAVYNAKRRSELWSKYHFLCSCQRCCATPMSYVDYVLQEFSSPYLELSSSSPNSAVYSMKIERFTDYVDDVITEYPSVGDPAMCCHNLEKVLALGFCDEDLQQKQSRQLPPLKLHPHHNLSLDIYTALSSAYQVYLTSLMASSSKGDDHLFEAFEMHRISTAYSLLLASATHHLFQSEPSLIASAANFWTSSGESSLNLSRSSQWVKFLGRNYPLPDLSLMVKNLCSGCTWVDKLSSCNFCCRALYAECQDVSNEFLNCVTNLSKNVWGFLSRGHPYLTVIKSLFDLGCHEKISCSAPMDFEAHSTDYLESYWGTKNDSCVSKYKRCLEQVRISIFWIGVHCLL 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3001588 3006230 + Bma018833.1 Bma04g00375 80744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00375 409 Gene3D Tetratricopeptide repeat domain 68 231 IPR011990 GO:0005515
Bma04g00375 409 PANTHER PROTEIN SET DOMAIN GROUP 41 9 71 - -
Bma04g00375 409 PANTHER PROTEIN SET DOMAIN GROUP 41 71 409 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00375 - - - pper:18767406 261.151
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00374 Bma-Chr4:2987836 Bma04g00375 Bma-Chr4:3001588 7.51E-32 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1362 . . . Bda03g00397 . Bpe04g00358 Bma04g00375 . . . . Cma09g01177 . . . . . Bhi04g02202 . . . . . . . . . . . . . Cone4ag1490 . . . . . . . . . . . . . . . . . . . . . Car09g01052 . . . . . . . . . . . . . . . . . . Chy03g00252 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005914 1 1 0 2 1 2 1 3 2 1 2 2 1 1 1 1 2 1 0 3 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00375 Bma_Chr04 FPKM 61.904743 68.387459 123.201263 126.568634 111.846474 108.156464 110.745903 82.091354 79.102051 80.326256