Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00376 ATGTCTGAGGAGAAGCACCACGGTCTCTTCCACCACAAGAAGGACGAAGACGACGGCGTCGTCGATTACGAGAAGGAGGAGAAGCACCACAAGCATCTCGAACAGCTCGGCGAGCTCGGAACCGCCGCTGCCGGCGCTTTTGCCTTGTACGAGAAGCATGAGGCGAAGAAAGACCCAGAGCACGGTCATCGGCACAAGATCGAAGAAGAAATAGCGGCGACGGTGGCGGTCGGATCGGGAGGGTATGCATTCCACGAACGCCATGAAGAGAAAGAAGCGAAGAAAGAGGCAAAGAAAGAAAACGAAGAGGAACATGGAAAGAAACACCACCTCTTTTAA 339 53.69 MSEEKHHGLFHHKKDEDDGVVDYEKEEKHHKHLEQLGELGTAAAGAFALYEKHEAKKDPEHGHRHKIEEEIAATVAVGSGGYAFHERHEEKEAKKEAKKENEEEHGKKHHLF 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3008962 3009407 + Bma018834.1 Bma04g00376 80745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00376 112 PANTHER ABSCISIC STRESS-RIPENING PROTEIN 5 1 111 IPR003496 -
Bma04g00376 112 Coils Coil 85 107 - -
Bma04g00376 112 MobiDBLite consensus disorder prediction 1 20 - -
Bma04g00376 112 Pfam ABA/WDS induced protein 22 98 IPR003496 -
Bma04g00376 112 PANTHER ABSCISIC STRESS-RIPENING PROTEIN 1 1 111 - -
Bma04g00376 112 MobiDBLite consensus disorder prediction 85 112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00376 - - - egr:104444686 152.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02510 Bma04g00376 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01438 Bma-Chr1:24460666 Bma04g00376 Bma-Chr4:3008962 5.98E-19 dispersed
Bma04g00376 Bma-Chr4:3008962 Bma04g00378 Bma-Chr4:3022666 1.91E-69 proximal
Bma01g02510 Bma-Chr1:82783178 Bma04g00376 Bma-Chr4:3008962 3.49E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1361 Blo01g01731 Blo12g00782 . . . . Bma04g00376 Bma01g02510 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1489 Cone7ag1455 . . . . . . . . Bda11g00871 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016643 1 0 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00376 Bma_Chr04 FPKM 323.05072 338.133911 331.989319 339.278381 380.843292 407.020294 372.60144 428.981201 450.250092 413.495239