Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00386 ATGCAACTTCAACTTCAACTTCGTCTTCACGTTTCCACTGGAGCTCTCGCGATGTTCCTTCTCAAGGCATGGAGAACGACCGCTTTTGGTGCCTATGGCTATCTCAACTTCACCAAATCTGGGTTTATTAAGCATTCCAAAAATTTCAAACCAGAGGATATGGATATCAGCATAGAAGGGAAAAACTGTGTTGTTACCGGAGCAAATTCAGGGATTGGTTACTCAACTGCAGAGGGTCTTGCTTCGCGTGGAGCTACTGTCTATTTGGTATGTCGTAATAAGGAAAGGGGAGAAGCTGCTCTATCTCAGATTAAGTCGACCACAGGCAACCAAAATGTTCATTTGGAGGTCTGTGATATTTCATCTATCGGCGAGATCAAGTCTTTTGTGTCAAGTTTTTCTTCAAAAGATGTCCCAGTTCATGTCTTGGTAAACAATGCTGGGTTGCTTGAAGATAAACGGATTACGACATCAGAAGGGTTCGAATTGAATTTCGCTGTAAATGTCTTGGGCACTTACACCATGACAGAACTGATGCTACCATTGCTAGAGAAAGCTGCTCCAGATGCACGGGTCATCACTGTTTCTTCTGGTGGAATGTACTCATCTCCCCTTACGGACAATCTACAGTACGATGAAAGCCAGTTTAATGGAATTGAACAGTATGCTCGAAACAAGCGAGTTCAGGTGGCACTTACTGAAAAATGGGCTGAAATGTACGAGAACAAAGGAATTGGTTTCTACTCAATGCACCCTGGTTGGGCAGAAACGCCTGGAGTTGCCAAAAGTATGCCTTCTTTTTCGGAAAGGTTTGGTGGTATATTTAGAACAAGCGCAGAAGGAGCTGATACAGTCATTTGGCTAAGCTTACAACCAAAAGAGAGATTGGTATCAGGAGAATTCTATTTTGACAGAGCCAAGGCTCCAAAACATCTGATATTTGCTGCCACCGAGTCGTCTCATGCCGGAATCGACTCGATCCTTTCCACCCTTCGTTCTTTAGCGGCTATCTCCTCATGA 1020 43.92 MQLQLQLRLHVSTGALAMFLLKAWRTTAFGAYGYLNFTKSGFIKHSKNFKPEDMDISIEGKNCVVTGANSGIGYSTAEGLASRGATVYLVCRNKERGEAALSQIKSTTGNQNVHLEVCDISSIGEIKSFVSSFSSKDVPVHVLVNNAGLLEDKRITTSEGFELNFAVNVLGTYTMTELMLPLLEKAAPDARVITVSSGGMYSSPLTDNLQYDESQFNGIEQYARNKRVQVALTEKWAEMYENKGIGFYSMHPGWAETPGVAKSMPSFSERFGGIFRTSAEGADTVIWLSLQPKERLVSGEFYFDRAKAPKHLIFAATESSHAGIDSILSTLRSLAAISS 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3104708 3107210 - Bma018847.1 Bma04g00386 80755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00386 339 PRINTS Glucose/ribitol dehydrogenase family signature 62 79 IPR002347 -
Bma04g00386 339 PRINTS Glucose/ribitol dehydrogenase family signature 243 260 IPR002347 -
Bma04g00386 339 PRINTS Glucose/ribitol dehydrogenase family signature 138 149 IPR002347 -
Bma04g00386 339 PANTHER RETINOL DEHYDROGENASE 24 329 - -
Bma04g00386 339 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 24 329 - -
Bma04g00386 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 57 305 IPR036291 -
Bma04g00386 339 Pfam short chain dehydrogenase 61 262 IPR002347 -
Bma04g00386 339 Gene3D - 47 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00386 K11168 DHRS12; dehydrogenase/reductase SDR family member 12 [EC:1.1.-.-] - qsu:112014478 524.628
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00386 Bma-Chr4:3104708 Bma14g02056 Bma-Chr14:43906972 8.51E-27 dispersed
Bma04g00386 Bma-Chr4:3104708 Bma03g00790 Bma-Chr3:7283347 1.51E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1333 . Blo12g00773 . Bda03g00406 . Bpe04g00370 Bma04g00386 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag0769 Cone20ag0359 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g00777
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009720 3 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 0 1 1 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00386 Bma_Chr04 FPKM 18.454571 21.173285 10.354091 10.740687 14.990872 16.266449 16.703533 12.162099 11.308511 12.045607