Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00389 ATGGCGATGCTTGATTCCCTCTTCAACAAGGGCTTCAAAGCTTCCAAATGTAAAACGATGCTGAAATTGACGATTCCTCGCATTAAGCTGCTTAGGAACCGAAGAGAAATTCATATAAGGCAGATGCGCCGGGACATTGCCAAGCTTCTCGAGACTGGTCAAGAAGCTACTGCGCGCATTCGGGTAGAGCATATCATTAGAGAAGAGAATATGATGGCTGCTCAAGAGATTCTTGAGCTGTTTTGCGAGCTCATTGCTGTCCGCCTTCCTATTATTGAATTACAAAGAGAATGTCCCCTAGACTTGAAAGAAGCTATATCAAGTGTGTGTTTTGCTGCACCAAGATGTGCCGATCTACCGGAGTTGCTGCAGGTTCAACTGCTTTTTGCGTCAAAATACGGGAAAGAATTTGTTTCTGCTGTAACTGAGCTCAGGCCAGATTGTGGTGTTAATCGTCAGTTAATCGAGCTGCTATCTATTCGGGCTCCGTCAGCTGAGAAAAAATTGAATCTTTTGAAAGAAATTGCTGAAGAGCACAAAGTAGATTGGGATCCAGCTGCCTCCGAAACAGAGCTGTATAAATCTCATGAAGACTTACTTTTTGTCAGCGGGTCGAAATTGCCACTTCCAAAAGAGAAACATGATGAAACATTGGTCTCTACCTCTGATGAAGCTCGTGGGGAACAATCTGATCTTGATACAGATAGTGACATACTAGACCTACCTAATGTTCCTATGGAATCGGTATTACGAGTTCGGACTCCAGGTGTTGCCACTGCACCAGCAATTGTCCCACCATTGCCGGAGCTTGGAAACAATGTACATACTCCTGAAAATGTTTCACAAGAATTAAACTTCAAAGCTGAAGAGACAAGCCAAGAAAGATCTGACCTGTATTATGCGGAGCATACAAGTAATTCTGCTGGAATTGTGGAAGATAAACAATTTCTGCCATTCATTTCACCACCTTCGCCATCGTTCTATTCATCAATATGTGCAAGATCAAGTGAACATCCAACTGAACCACCAAGAACTGTTTTAAGGACTACAAGCGAGGTCGACGTGGATTTACAGGATGTGTTGGCTGCTGCTCAGAATGCTGCTGAGTCAGCTGAACGAGCAGCAGCTGCAGCTCGCGCGGCCGCAAGTCTTGCACAGATCAGAATTAGTGAAATCACAAATAGAAAAAATGAGCAAGTTCCAGAGAGTGGATGTGAGAACCCATTTCATACAGGCAAGCCTAACAAGGTGAATTCCAAGGAGTTACCAGATATTGCCGAACACAGCTCTAGTGGTAGTGTTGTGGTAGAACCTCCTCGGGACGAAAATCGTACCCAAGAATCAGAGGATTTCAATGTCACTTCAGTTGAACAAATCAAAGTGAAGGTCGACCATAATTCAACTCATCACACACCTCAAAGATTGCCTTTTATGGAGGACGACACATATTTCTCGTATCCAAACTTGTTTACGTCACAAAACTCGAGTCAGGAGTCTGGCTCTCATTCTCTCTGA 1515 43.83 MAMLDSLFNKGFKASKCKTMLKLTIPRIKLLRNRREIHIRQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELFCELIAVRLPIIELQRECPLDLKEAISSVCFAAPRCADLPELLQVQLLFASKYGKEFVSAVTELRPDCGVNRQLIELLSIRAPSAEKKLNLLKEIAEEHKVDWDPAASETELYKSHEDLLFVSGSKLPLPKEKHDETLVSTSDEARGEQSDLDTDSDILDLPNVPMESVLRVRTPGVATAPAIVPPLPELGNNVHTPENVSQELNFKAEETSQERSDLYYAEHTSNSAGIVEDKQFLPFISPPSPSFYSSICARSSEHPTEPPRTVLRTTSEVDVDLQDVLAAAQNAAESAERAAAAARAAASLAQIRISEITNRKNEQVPESGCENPFHTGKPNKVNSKELPDIAEHSSSGSVVVEPPRDENRTQESEDFNVTSVEQIKVKVDHNSTHHTPQRLPFMEDDTYFSYPNLFTSQNSSQESGSHSL 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3190077 3192718 - Bma018851.1 Bma04g00389 80758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00389 504 Gene3D - 5 192 IPR042277 -
Bma04g00389 504 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 1 501 - -
Bma04g00389 504 Coils Coil 39 59 - -
Bma04g00389 504 Coils Coil 361 381 - -
Bma04g00389 504 Pfam Regulator of Vps4 activity in the MVB pathway 18 182 IPR005061 GO:0015031
Bma04g00389 504 MobiDBLite consensus disorder prediction 212 237 - -
Bma04g00389 504 MobiDBLite consensus disorder prediction 212 233 - -
Bma04g00389 504 PANTHER IST1 FAMILY MEMBER 1 501 IPR005061 GO:0015031
Bma04g00389 504 MobiDBLite consensus disorder prediction 395 455 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00389 - - - pper:18767375 533.872
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02532 Bma04g00389 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00173 Bma-Chr1:1608549 Bma04g00389 Bma-Chr4:3190077 7.11E-91 dispersed
Bma04g00389 Bma-Chr4:3190077 Bma15g00084 Bma-Chr15:941187 2.34E-38 dispersed
Bma01g02532 Bma-Chr1:83020611 Bma04g00389 Bma-Chr4:3190077 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1309 Blo01g01750 Blo12g00768 . Bda03g00412 Bpe02g00192 Bpe04g00378 Bma04g00389 Bma01g02532 . . . . Car01g00848 . . Cpe06g00956 . . . . . . . . Cla08g00312 Cam08g0750 Cec08g0303 . Clacu08g0461 . . . . . Cone20ag0683 . . . . . . Bda11g00852 . . . . . . . Cmo09g01216 . . . Car09g01087 . . . . . . . . . . . . . . . . Lsi08g00258 . Chy03g00282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006306 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00389 Bma_Chr04 FPKM 15.761508 19.976303 13.040005 13.50066 14.753081 12.737733 14.876345 10.54385 11.007006 10.254625