Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00391 GAGGATCTTTCTTGTAGACTAGATATGCTGTTGCAGAGGCCAAGTGGAGAATATATACGAATTGGGAGTGAGAGATCAAATGCATTGACTGAAAGAGATAATATGAATGATATGTACAAAGTAAGAGATACTGAAATTATGCAACCCAATAATGGTGATGAGGCCATTCATAAAAATTTTAGACATTCTGTAAATAATGAGACAGAGAGTTCTTCCCCTATTTGTGGTATGATGGATGCTGCAATCTGGGAACCTCCTGGACCTGGAGACCTTGATGATGACTTGGAAGAAAACTTTAATAACGACAATGATGAAGAAGCAAGTGTGGTTTGTAATCAAGACACCAATATTGAAGAATGCGGTAAGTCGGTTTCTTTGAGTTTTAAAGAAAGAAATGCGAGCTTTAAACTTAGAGAGGAGAAACTAAGAGCAATGGAGGAGGTTTATAATGGGCGGTTCAAGTCTATTGTTCATCAACTTTTTCAATCTTTTGGAGTTGATTCGTCAGCCAAAGATGGTGAAAATTGGGTGGACATTGTTGCGTCTTTGTCTTGGGAAGCTGCTTTGTTTTTGAAGCCTGACATCTCAGATGGAAAAGCAATGGATCCTGACGGCTCCGTAAAAGTTAAATGTGTTGCTGTGGGATCGCGTGGCCAAAGTAAATTTGTCAAGGGTCTAGTCTTCAAAAAGCACGCATCTCACAAGCACATGCCAACCAAATTTAAAAACCCGAAGTTGCTGTTGATCCAAGGGGTGCTAGGTCCGTCTTCAAGTGGGTTGCTATCGCTCAATACAATGGATCAGGAAAAGGATCATGAAAAGTCTATAATTGAGATGATTGAATTATGCCAACCGGATGTGATTTTAGTTGAAAAAACTGTCTCTCGTGGTATCCAAGAATCTATTCTTGGAAAAGGAAGAACATTAGTTCTTGAGATGAAGCTTCACCGGTTAGAGAGAATTGCTCGTTGTCTTGGTTCGCCTATCCTATCCTCTGATTCTATGATGAACCAAAAGCTAAAATATTGCGACACTCTTTACTTTGAAAAATACGTAGAAGAACATGTCACTTTTGGTGAGGAGGGAAAGCGTGCAAGTAAGACATTATTGTTCATTGAGGGTTGTCCTACACGTCGAGGTGGTACGATTTTGCTGAAAGGATCGCACAGTGATGAATTGAAGAGGATTAAGTGTGTAGTTCGCTGTGCGGTGGTCATTGCCCATCATTTGATACTTGAGACTTCATTCCTTGTCGATCAGAGTGCTATGTTTACGACGATACCATTTGTGGGCTTGTCAGAATATATGCCGCTTAACAAACAATTCCCTGATTTGGTTCGTAGTAGTTCTCAACTTGAGGAACCTGCTGATAATAGTCTTCAATCCACTGTTGATATTCCCATTTCCACCGAATTCCAAGGAGATTCTGACGAATCAAACTTGGAATTAGAAGGCGACTTGGCGATTTCTCATGAACCATATACTCCACTTATTTTTTCTGGCTTTTCCTCCCTTTCAGAATCGCTGAAAAAGGTTATTGGAGATATCCCTTTTGTCTCGTCGTATTCATCGTTATCGTCTTATTTGGGATTCCATGGAGACCAACCTGATGATCAGATTGATGAGACCATTTCCATTCCAATTGTGACAGAGACAGATAATGGATATAATGAAAGTAAAGGTACATTAGATGAAGAGAGCTTAGTTGAAGATGTAAAACCCCAGTCTATACCAGCATTCTCTGAAATCCCAGCTGAGGTGGAAAAGGCTAATGGGTATGTTGAAGAGCATACAAAGGGAGAAGATAATGTCCACCCCATATCAAACTCCCAGAGTATCTTAGTTCTGATGTCAAGCCGAAATGCCATGAGAGGAGTTGTCTGTGAGCAAAGCCATTTTTCTCACATCATGTTCTACAAGAATTTTGATGTTCCGCTAGGAAAGTTTCTACGGGAAAATTTATTAAATCAGAATACCAAGTGCAATTCATGTGGTGAACCACCGGGAGCTCACTTTTACTACTATGCTCATAATAACAAGCAGCTAACAATCCAAGTCAGACAGATTCCGGGAGGTAAATTCTTGCCTGGGAAAAAGGAAGGGAAACTTTGGATGTGGAGTCGATGTGGTTATTGTAAATTGGAAAAAGAGACATCAAATTATAGCAAAAGGGTGTTAATTTCACCCGATGCACGATGTTTATCATTCGGGAAGTTCCTTGAGCTCAGTTTCTTTCACTATTCTTCATCCAGTAAATTATCCAGCTGTGGCCATTCATTGTACAGAGACTTCCTTCACTTCTTTGGATTTGGCCCCATGGTTGCTATGTTCAAATATTCTCAGGTTCCAACTTATACAGTGTCTGTTCCTCCTCAGAAGCTGGAGTACGGCAAGTTAGTCGGACAAGAGAGGGTTATCAAAGCAACTCAAAATGTGTACATGAAAGGGATGCAACTGTTCACGGAGATCGCAGACACTTTGAAAAAGATCAGATCTCAACTTAAAAGCACAACTTTGAATCTTCAAGGCTCACTTAAAGACTTCTCTGTTGTTGAAGAGATGCTAAAGAGGGATAGATTTGAATTTGAGGTGAACATTCATAATACTCTCACTGATGATGGGAATGCTGACCCTGTTTATAAGTTTCTCCTTATTAATCGCCTTCTCTGGGAGCTTTTGCTGGAATCGTGTATATGGGATCGTCGCCTTTATTCGCTACTTTCTCCTAATTCACCTATTTACTGTGAAGTGGCTGAAAAAGTTATGCCTGAACCAATTAGAGTAACTGAAGGGACAGAACAATATGATGAAATAAGAAGTCATGATAGTCCCCAATCAGCAATTCAGCCAGAGAAATCATTAGGATCAAATGAATTTTTGGTGAAAGAAAACAGAGTTGAAGTAGTTGTTCCAATAGATACGAATTCATCGCCAGATAATTCAAGCCAGAAAAATAATGATATTATGTTTGAACAAGTCCCGAGCTCCAAAGGTGATTATTCCAATGTATATGCTTCAAAAAAATGGTCGTCTTTTAATAAATCCTCCTTCAAATTAAGAGTTTCAAAGGATTGGTACTGGACACCATTTTCTGAGATTCGACAGGTACCCATGAAGGACATTACGAGAAGTTATATACCGAAATTTGAAGTCGTGAGTAGCGATACGGCAAAATATTTACCCTCAGCATACCAACTAATAATGCAAGAAGGATCGAGGCTTCACATTCCACTTGGAACTGATGATCATGTTGTGTCAGATTATGAAGGAGAACTCTCAAGTATTGTTGCCTGTGTACTAGCGATGTTGAACGAACTGCCTGTCCAAACAGAAATCCTTGATCAGGAGAACGTAGAGCTCCGAGTTTCTTCTAAATCGTTTGATAATTTACGCAGCCTGAATCGATTTCCTTCAAGTGAATCTTCAGAGTCTGATTCCATACATTCTACTGAAGGATTAAGATTTTTCAGTTTTGATGGGTTGAATCTGCTAGATTCTATTGTTCCAGAGACTTTTCGACCAGCAGAACCTGAAGGCGTTGTACGATCACTTGCAAAGGGAAAGTATATCGTAAATTGCCCATATTTCATGCAGTTTCTTGATCTTCGGAGCCGATGCTTACCTTCTGAGTCACATTACATTGCTTCTCTAAGCCGTTGTAGAGACTGGGAAGCCCAAGGCGGAAAAAGCAAATCTTTTTTCGCTAAAACACTTGATGATAGGTTTATAATAAAGGAAATTAAGAAGACAGAATATGATTCCTTCATGAAGATCGCACCTGATTATTTCGACTACATGAATCAATCGTTTGAATTGGGAAATCAAACTTGCCTAGCCAAAGTTCTCGGGATTTATCAGGTTAGACAGACAAAAAGCGGAAAGGAGACAAGGCATGATCTAATGGTGATGGAGAATCTCACATTTGGTCGGAAAATTTCTCGTCAATATGATCTTAAAGGAGCCCTTCATGCTCGATACAATTCAGTCGCCAGCGACGTGCTTTTAGATCAGAATTTCGTTAACGACATGAATACATCCCCGTTGTATGTTAGTAACCAAGCAAAGCGAATCTTGCAAAGGGCTGTTTGGAATGACACAACTTTCCTCAATTCAATAAATGTAATGGACTATTCTTTACTTGTCGGAGTCGATTCCGAAAGGCGAGAACTTGTCTGTGGAATCATTGATTACCTAAGGCAATATACATGGGATAAGCAGCTAGAGACATGGGTAAAATCTTCGCTTGTTCCTAGGAATATCTTGCCGACAGTAATATCACCGAAAGAATATAAGAGGAGATTCAGAAAGTTCATGTCGACGAATTTCTTTAGCGTCCCGGATCGTTGGTGCATGCAGAGGAGCGAGTTTGATGACCCTTGTGAACTATGTGGCGTGGGAGAAGATGAAGTCCCGAATTGA 4419 39.96 EDLSCRLDMLLQRPSGEYIRIGSERSNALTERDNMNDMYKVRDTEIMQPNNGDEAIHKNFRHSVNNETESSSPICGMMDAAIWEPPGPGDLDDDLEENFNNDNDEEASVVCNQDTNIEECGKSVSLSFKERNASFKLREEKLRAMEEVYNGRFKSIVHQLFQSFGVDSSAKDGENWVDIVASLSWEAALFLKPDISDGKAMDPDGSVKVKCVAVGSRGQSKFVKGLVFKKHASHKHMPTKFKNPKLLLIQGVLGPSSSGLLSLNTMDQEKDHEKSIIEMIELCQPDVILVEKTVSRGIQESILGKGRTLVLEMKLHRLERIARCLGSPILSSDSMMNQKLKYCDTLYFEKYVEEHVTFGEEGKRASKTLLFIEGCPTRRGGTILLKGSHSDELKRIKCVVRCAVVIAHHLILETSFLVDQSAMFTTIPFVGLSEYMPLNKQFPDLVRSSSQLEEPADNSLQSTVDIPISTEFQGDSDESNLELEGDLAISHEPYTPLIFSGFSSLSESLKKVIGDIPFVSSYSSLSSYLGFHGDQPDDQIDETISIPIVTETDNGYNESKGTLDEESLVEDVKPQSIPAFSEIPAEVEKANGYVEEHTKGEDNVHPISNSQSILVLMSSRNAMRGVVCEQSHFSHIMFYKNFDVPLGKFLRENLLNQNTKCNSCGEPPGAHFYYYAHNNKQLTIQVRQIPGGKFLPGKKEGKLWMWSRCGYCKLEKETSNYSKRVLISPDARCLSFGKFLELSFFHYSSSSKLSSCGHSLYRDFLHFFGFGPMVAMFKYSQVPTYTVSVPPQKLEYGKLVGQERVIKATQNVYMKGMQLFTEIADTLKKIRSQLKSTTLNLQGSLKDFSVVEEMLKRDRFEFEVNIHNTLTDDGNADPVYKFLLINRLLWELLLESCIWDRRLYSLLSPNSPIYCEVAEKVMPEPIRVTEGTEQYDEIRSHDSPQSAIQPEKSLGSNEFLVKENRVEVVVPIDTNSSPDNSSQKNNDIMFEQVPSSKGDYSNVYASKKWSSFNKSSFKLRVSKDWYWTPFSEIRQVPMKDITRSYIPKFEVVSSDTAKYLPSAYQLIMQEGSRLHIPLGTDDHVVSDYEGELSSIVACVLAMLNELPVQTEILDQENVELRVSSKSFDNLRSLNRFPSSESSESDSIHSTEGLRFFSFDGLNLLDSIVPETFRPAEPEGVVRSLAKGKYIVNCPYFMQFLDLRSRCLPSESHYIASLSRCRDWEAQGGKSKSFFAKTLDDRFIIKEIKKTEYDSFMKIAPDYFDYMNQSFELGNQTCLAKVLGIYQVRQTKSGKETRHDLMVMENLTFGRKISRQYDLKGALHARYNSVASDVLLDQNFVNDMNTSPLYVSNQAKRILQRAVWNDTTFLNSINVMDYSLLVGVDSERRELVCGIIDYLRQYTWDKQLETWVKSSLVPRNILPTVISPKEYKRRFRKFMSTNFFSVPDRWCMQRSEFDDPCELCGVGEDEVPN 1472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3202551 3209195 + Bma018853.1 Bma04g00391 80760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00391 1472 Pfam TCP-1/cpn60 chaperonin family 170 416 IPR002423 GO:0005524
Bma04g00391 1472 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 70 1462 - -
Bma04g00391 1472 SUPERFAMILY GroEL apical domain-like 219 387 IPR027409 -
Bma04g00391 1472 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1390 1439 IPR002498 GO:0016307|GO:0046488
Bma04g00391 1472 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1226 1387 IPR002498 GO:0016307|GO:0046488
Bma04g00391 1472 Gene3D GroEL 218 387 IPR027409 -
Bma04g00391 1472 CDD Fab1_TCP 154 420 - -
Bma04g00391 1472 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1125 1442 IPR002498 GO:0016307|GO:0046488
Bma04g00391 1472 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1169 1305 IPR027484 -
Bma04g00391 1472 CDD PIPKc_PIKfyve 1195 1442 IPR044769 GO:0000285
Bma04g00391 1472 PANTHER 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE FAB1D-RELATED 70 1462 - -
Bma04g00391 1472 SUPERFAMILY SAICAR synthase-like 1188 1442 - -
Bma04g00391 1472 SMART PIPK_2 1161 1443 IPR002498 GO:0016307|GO:0046488
Bma04g00391 1472 Gene3D - 1307 1443 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00391 K00921 PIKFYVE, FAB1; 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150] - cit:102608890 1484.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02535 Bma04g00391 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00391 Bma-Chr4:3202551 Bma15g00034 Bma-Chr15:396036 0 dispersed
Bma01g02535 Bma-Chr1:83052772 Bma04g00391 Bma-Chr4:3202551 1.41E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1304 Blo01g01752 . . Bda03g00414 Bpe02g00190 Bpe04g00380 Bma04g00391 Bma01g02535 . . . Cma09g01172 . . . Cpe06g00918 . . . . . . . . . . . . . . . . . . Cone20ag0680 . . . . . . Bda11g00850 . . . . . . . Cmo09g01170 . . . Car09g01046 . . Bhi09g01620 . . . . . . Cla09g00997 Cam09g1055 Cec09g1057 Cco09g1071 . . Cre09g1019 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004019 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 0 0 7 3 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00391 Bma_Chr04 FPKM 5.377221 6.060578 6.014395 6.041734 9.737442 8.321838 10.393038 6.627422 6.89773 8.242249