Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00393 ATGGAGGGAAGAACTTGTTTGAAACCCATCATTTTCCTCTACTTTCTCGCTTGTTTCTTCTCGGGAAACAAACAGGTGTGTGAGGGAAAAGAGAGAGCTGGCGCAGAGAGTGGTATTCGTGGAGTTAAGAAGATGAGAGGAATGTTCGTGTTTGGAAGCTCTCTGGTCGACAATGGAAACAATAATTTGATAAAGAATTCAATCGCTAAAGCTAACTATTTGCCTTATGGAATAGATTTTCCTCTAGGATCTTCTGGTAGATTTACAAATGGAAAGAACGTGGTCGATTTACTAGGTGATTTTCTCGAACTTCCGTCGTACATTCCTGCGTTTTATGACCCTGCAACTAAGGGGAAGAACATCGTTAATGGAGTCAACTATGCCTCCGGTGGCTCTGGCATTCTCGACAATACTGGTTCTTTTGCGGGAAAAGTAGTTAGTCTGAGAGAACAGATAGCAAACTTTGAGGAGGTGACGTTGCCGGAGATGGGTTGGATCCATGGTGGCCTGCCGCTGTTGTCAGTCGTCGGAGACTACTTGTTTCTGGTTGGGAGCGGAGGAAATGATTATTCACTCAACTATTTTCTCTTCAGATCCTCCCTCAATATCTCCCTCCATACATTCACTGTTAATCTCACCGCCTCTCTCTCTCTTCAACTCAAGAAATTACACAGTTTAGGAGGAAGAAAATTTGTGATAATGGGAGTAAATCCACTGGGCTGCAGCCCATTTGCAAGAAGAGAGAGAGGAGAGTGCAACTCAGAGATGAACATGGCGGCTCGTCTCTTCAATCTCAACTTGAAGACGATGGTCGACGAGATTAGGCCACAAATGCCAGGATCTACCCTCGTTTTCGTCAATTCCTACAAAATTCTCAAACATATCATCAACTTTCCAACTCTCAAAGGTTTCAAGGACTCTAAGAGCACTTGCTGTGAAGTGACGAAGGTGAGTGAAGGTGGGAATGGAATATTATGCAAAAGAGGAGGGCAAACATGTCCGAACAGAAAGGATTATGTTTTCTTTGATGGGTTACATCCGACAGAAGCCGTCAATTTGTTCATAGCAAAGAAAGCTTTTTCGTCTCAGTTTCTCAATGAAGTTTATCCAACTAATGTTCAAAATCTCACTAAGATTTAG 1140 42.89 MEGRTCLKPIIFLYFLACFFSGNKQVCEGKERAGAESGIRGVKKMRGMFVFGSSLVDNGNNNLIKNSIAKANYLPYGIDFPLGSSGRFTNGKNVVDLLGDFLELPSYIPAFYDPATKGKNIVNGVNYASGGSGILDNTGSFAGKVVSLREQIANFEEVTLPEMGWIHGGLPLLSVVGDYLFLVGSGGNDYSLNYFLFRSSLNISLHTFTVNLTASLSLQLKKLHSLGGRKFVIMGVNPLGCSPFARRERGECNSEMNMAARLFNLNLKTMVDEIRPQMPGSTLVFVNSYKILKHIINFPTLKGFKDSKSTCCEVTKVSEGGNGILCKRGGQTCPNRKDYVFFDGLHPTEAVNLFIAKKAFSSQFLNEVYPTNVQNLTKI 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3213383 3214846 + Bma018855.1 Bma04g00393 80762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00393 379 Pfam GDSL-like Lipase/Acylhydrolase 49 358 IPR001087 GO:0016788
Bma04g00393 379 Gene3D SGNH hydrolase 39 364 IPR036514 -
Bma04g00393 379 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 15 378 - -
Bma04g00393 379 CDD SGNH_plant_lipase_like 48 361 IPR035669 -
Bma04g00393 379 PANTHER OS06G0560700 PROTEIN 15 378 - -
Bma04g00393 379 SUPERFAMILY SGNH hydrolase 48 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00393 - - - mdm:103422075 457.603
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02536 Bma04g00393 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00393 Bma-Chr4:3213383 Bma04g00342 Bma-Chr4:2786968 5.49E-73 dispersed
Bma01g02536 Bma-Chr1:83063773 Bma04g00393 Bma-Chr4:3213383 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1291 Blo01g01753 Blo12g00766 . Bda03g00416 . Bpe04g00382 Bma04g00393 Bma01g02536 . . Cma01g00940 Cma09g01164 . . . Cpe06g00922 . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g00848 . . . . . Sed10g1778 Cmo01g00980 Cmo09g01166 . . . Car09g01041 . . Bhi09g01567 Tan01g2976 Cmetu01g1498 . . . . Cla09g00962 Cam09g1014 Cec09g1017 Cco09g1029 . . Cre09g0977 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007522 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00393 Bma_Chr04 FPKM 25.291224 24.646982 26.305668 26.167236 23.384317 22.334337 22.994696 23.777134 27.296499 25.157648