Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00399 GTGATGGCTGAATCTGGAAGAAAATGGTGGGTTTTGAGATCAATGACAGTGGCTATGCTCAATTTCCTACTTGCTCTTGCAATGGTTTCGGCCGAAAGAAGCTTGAAATTGCAAGCTTCAGGATACGAAGGATCAGAACAGAAAGAAACCTCCAATTACCTTCTCAAAGCTGTAAATTTCTTATGGCAGCCGGAGGAATCAGGATATAAACACGTCTGGCCGGACATGGAATTTGGGTGGCAAATTGTGGTAGGCACTTTAGTTGGCTTCTGTGGAGCTGCATTTGGGAGTGTTGGTGGAGTTGGTGGTGGCGGCATTTTCGTTCCTATGCTTAGTTTAATTATCGGGTTCGATCCGAAGTCATCAACAGCCATTTCTAAATGTATGATTATGGGAGCGGCAGCTTCGACAGTTTACTATAACCTTAAGTTAAGACATCCTACTCTGGATATGCCCATTATTGACTATGACTTGGCTCTCCTCATCCAGCCTATGCTAATGTTAGGCATTAGCATTGGAGTAGCTTTCAATGTGATATTTGCTGATTGGATGGTCACAGTTCTGCTCATAATTCTCTTCATTGGCACATCGACTAAGGCATTTTTCAAGGGCGTCGAAACGTGGAAAAAGGAAACGATCATGAAAAAGGAGTTTTCATTGCTAAGCTGTGATATCCATTTGCAGGTTTCTATGATTGAAAATGTTTATTGGAAGGAATTTGGACTTCTTGTTTTTGTGTGGGTTGCATTTCTAGGATTGCAAATCGCCAAGAACTATACAAGTACTTGTTCCACGTTGTATTGGGTATTGAACTTGCTTCAGATCCCAGTTTCGGTTGGTGTATCTCTGTACGAGGCCGTTGGGTTGTATAGAGGGACAAGAATAATATCCTCTAAGGGAGATCAGGGGACAAATTTGAAAGTACACCAACTTGCCTTGTATTGTGCTTGTGGTGTATTGGCCGGAGTTGTAGGCGGACTTCTCGGACTTGGCGGAGGATTTATAATGGGACCACTATTTTTGGAGCTCGGAGTTCCTCCTCAGGTCTCGAGTGCCACAGCAACCTTTGCGATGACCTTCTCCTCTTCAATGTCTGTCGTGGAATACTATTTACTGAAACGTTTCCCAGTTCCTTACGCGCTCTACTTCGTAGCGGTGGCCACCATTGCCGCCTACGTTGGGCAGCATCTCGTGAGAAGGCTCATCCTTTTCCTCGGAAGAGCTTCCCTGATCATCTTCATTCTTGCATCCACCATATTCATCAGCGCAATCTCGCTAGCGGAACGAGAAGCAGTAAATGCAGCAGAGAGAGCAGAGAGAAAGCAGCAATTAAGAGAAAAGAAAAGACGGGAAGAGATGGATAGGATGGAAAAGGAGAGACAAGCAGAGCTAAGGAGTTACAAGGGTTTGATGGTGTCCGACAAAATGACATCTAACAAACAAATTGCGTCTACGCAGAAATCCCTACAGGAGCTGGAGGACGATTTCATGTAA 1494 44.44 VMAESGRKWWVLRSMTVAMLNFLLALAMVSAERSLKLQASGYEGSEQKETSNYLLKAVNFLWQPEESGYKHVWPDMEFGWQIVVGTLVGFCGAAFGSVGGVGGGGIFVPMLSLIIGFDPKSSTAISKCMIMGAAASTVYYNLKLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFADWMVTVLLIILFIGTSTKAFFKGVETWKKETIMKKEFSLLSCDIHLQVSMIENVYWKEFGLLVFVWVAFLGLQIAKNYTSTCSTLYWVLNLLQIPVSVGVSLYEAVGLYRGTRIISSKGDQGTNLKVHQLALYCACGVLAGVVGGLLGLGGGFIMGPLFLELGVPPQVSSATATFAMTFSSSMSVVEYYLLKRFPVPYALYFVAVATIAAYVGQHLVRRLILFLGRASLIIFILASTIFISAISLAEREAVNAAERAERKQQLREKKRREEMDRMEKERQAELRSYKGLMVSDKMTSNKQIASTQKSLQELEDDFM 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3261377 3269292 + Bma018862.2 Bma04g00399 80768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00399 497 MobiDBLite consensus disorder prediction 439 462 - -
Bma04g00399 497 MobiDBLite consensus disorder prediction 476 491 - -
Bma04g00399 497 MobiDBLite consensus disorder prediction 476 497 - -
Bma04g00399 497 PANTHER SULFITE EXPORTER TAUE/SAFE FAMILY PROTEIN 3 11 442 - -
Bma04g00399 497 Coils Coil 424 461 - -
Bma04g00399 497 Pfam Sulfite exporter TauE/SafE 39 196 IPR002781 GO:0016021
Bma04g00399 497 Pfam Sulfite exporter TauE/SafE 315 439 IPR002781 GO:0016021
Bma04g00399 497 PANTHER CEREBLON 11 442 - -
Bma04g00399 497 Coils Coil 475 495 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00399 - - - csin:114321787 603.594
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02468 Bma04g00399 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02468 Bma-Chr1:82356446 Bma04g00399 Bma-Chr4:3261377 2.29E-26 dispersed
Bma01g00528 Bma-Chr1:4362038 Bma04g00399 Bma-Chr4:3261377 3.20E-36 transposed
Bma01g02467 Bma-Chr1:82352746 Bma04g00399 Bma-Chr4:3261377 0 transposed
Bma04g00561 Bma-Chr4:5090981 Bma04g00399 Bma-Chr4:3261377 1.27E-115 transposed
Bma10g00779 Bma-Chr10:12513564 Bma04g00399 Bma-Chr4:3261377 1.10E-10 transposed
Bma01g02548 Bma-Chr1:83150782 Bma04g00399 Bma-Chr4:3261377 7.23E-32 wgd
Bma02g00071 Bma-Chr2:620694 Bma04g00399 Bma-Chr4:3261377 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g329 . Blo12g00762 . Bda03g00423 . Bpe02g00178 Bma04g00399 Bma01g02468 . . Cma01g01600 . Car09g00485 . . . Cpe06g00420 . . . . . . . . . . . . . . Cone4ag1533 Cone7ag1419 . . Lsi04g02228 Csa03g04439 Chy04g00261 . . . . . . Bpe04g00389 . . Sed05g1606 Cmo01g01647 Cmo09g00543 Cma09g00553 . Car01g01220 . . Cpe02g00378 Bhi09g02423 Tan01g3782 Cmetu04g0213 . Hepe01g2121 Mch11g0659 . . . . . . . . . . . Cme04g00292
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001976 6 3 4 3 6 2 2 1 1 1 1 1 2 1 2 2 1 4 2 1 1 2 2 2 2 2 1 2 2 3 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00399 Bma_Chr04 FPKM 5.782886 6.893818 7.137482 7.908065 20.5781 19.645433 20.677816 0.769648 0.923778 0.973669