Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00401 ATGGTGAATTCTATGGTAGAACGCGCCACTAGTGATATGCTGATTGGTCCTGATTGGGCCATGAATATAGAGATCTGTGACATGCTCAATAACGACCCCGGGCAAACAAAAGATGTTATTAAATGTATAAAGAAGCGCCTTAAAAGTAAGAACACCAAAGTTCAACTTCTTGCCTTGACGCTATTGGAGACAATTGTTAAGAACTGTGGCGACATCGTACATATGCATGTGGCAGAGAAGGATGTTCTGCACGAGATGCTAAAAATAGTAAAGAAGAAGCCTGACTTTCATGTCAAAGAGAAGATATTGATTCTGATTGATACCTGGCAAGAAGCTTTTGGAGGACCAAGGGCAAGATATCCACAATACTATGCTGCATACCAGGAATTATTGCGTGCTGGGGCAGTTTTTCCTCAGAGAATGGAGAGGTCTGGCCCTGTACTTACACCACCGCAGACACAACCCTTGACATCATATCCTCAAAATCTTCGTAATCCTGATTATCATTCCGATAGACCTGGATCTTCTGCTGAGTCTGAATTTCCAACTTTGAGCTTGTCTGAAATTCAGAATGCGCGGGGAATTATGGATGTCCTAGCTGAAATGCTAAATGCAATAGATCCAGCGAACAAGGAGGGCTTAAAGGAAGAAGTTATTATTGATTTAGTGGAACAATGTCGTATTTACAAGCAGAGAGTGGTTCATCTTGTTAACTCCACCCAGGATGAGTCACTGCTTTGCCAAGGACTAGCACTCAATGATGATTTGCAGCGTGTGCTTGCCAAGCATGAAGCTATCGCTTCAGGAACTTTACGTGAGACACAGGAACCCAAGCCTGAACCTTCTAAAACACTTGTTGACATTGGTCCGCTTGTTGATAATGAACCCATTAGCAAACAATCTGAACCAAGATCGACGTCAAGTGCTGGCACAAGATCTCAAACACTTAATCTGCTGCTCCCAGGACCTCCTGCTACTGATGGTTCAGCTCCTGCAGTGAAGGCTGACTCTATTGACCTGCTGAGTGGTGATAACTATAATTCACCTAAGGCAGATACTTCTCTGGCTCTTGTTCCATTGGGAGAGCAACATCCTACCACTCCCCAATCACAGCAGAATGCCCTTGTTCTTTTTGACATGTTTTCTGATGGTAACAATGCAACTAATTCTGCAAATCAGAAGGAACAAGCCATTCCTTTGCCTCCCCAAATTCAAGGGTATGACAGTCTCCAATCTCCACGAAGTGGATTTTACCCAAATGGAAATGCTCCAAACTTACAGTCGCCTTACTACAAGCAGTCAGTATATGAGATGCAGGGTCCTGGGTTTGCTTGGAGTGATGGCCAGTCTACTCAGCAACAGCAACAATCGCTTTCACCAACCTACAGAATGGGTGCCCAAGGTGGTGAATCATTGCCAGCACCCCCGTGGGAATCTCAGCCTGTTGATAACAATGGCTATGCAGATGCTCAACACCCAGCTTATCCGATGCAGGGTGCCCATGTCATTACTCCGGGACTTCAACCAGTGGGAAACAATCCTGTGTATGTCCAGTCTATTATGAGTGGACAATCACAGCCTAATCACTGGCCAGGGCGGTATGAGCAATCAATTCGGCTTCCACCCGCAGCAGATTACCGGACCACACATGCATATGTTTCCTGCAGCCAATCCATGCCAGGCCAGATGGCATCTTTTTATTATCCTCAGCAGTACGGCAACCAACATGCCAGTTATGGCTATGTTCAACCCCAGGGGGGTCAATATATGGAGCAACAGATGAATGGACTTTCTGTAGCGAGTGGGAGAAATTCTTCCAACCAGGGTCTCACCTCATCTTACGTCCCACCAAGTAAGGCTACTAAGCCAGAGGATAAGCTATTTGGAGACCTTCTTGACATGGCCAAGTTGAAATCCTCCAAAGCCTCTTCTGCAGGCACGGTGTAG 1947 45.71 MVNSMVERATSDMLIGPDWAMNIEICDMLNNDPGQTKDVIKCIKKRLKSKNTKVQLLALTLLETIVKNCGDIVHMHVAEKDVLHEMLKIVKKKPDFHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRMERSGPVLTPPQTQPLTSYPQNLRNPDYHSDRPGSSAESEFPTLSLSEIQNARGIMDVLAEMLNAIDPANKEGLKEEVIIDLVEQCRIYKQRVVHLVNSTQDESLLCQGLALNDDLQRVLAKHEAIASGTLRETQEPKPEPSKTLVDIGPLVDNEPISKQSEPRSTSSAGTRSQTLNLLLPGPPATDGSAPAVKADSIDLLSGDNYNSPKADTSLALVPLGEQHPTTPQSQQNALVLFDMFSDGNNATNSANQKEQAIPLPPQIQGYDSLQSPRSGFYPNGNAPNLQSPYYKQSVYEMQGPGFAWSDGQSTQQQQQSLSPTYRMGAQGGESLPAPPWESQPVDNNGYADAQHPAYPMQGAHVITPGLQPVGNNPVYVQSIMSGQSQPNHWPGRYEQSIRLPPAADYRTTHAYVSCSQSMPGQMASFYYPQQYGNQHASYGYVQPQGGQYMEQQMNGLSVASGRNSSNQGLTSSYVPPSKATKPEDKLFGDLLDMAKLKSSKASSAGTV 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3274224 3279215 + Bma018864.1 Bma04g00401 80770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00401 648 Gene3D - 183 275 IPR038425 -
Bma04g00401 648 MobiDBLite consensus disorder prediction 144 182 - -
Bma04g00401 648 Gene3D - 1 138 IPR008942 -
Bma04g00401 648 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Bma04g00401 648 Pfam VHS domain 3 129 IPR002014 GO:0035091|GO:0043130
Bma04g00401 648 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Bma04g00401 648 MobiDBLite consensus disorder prediction 599 622 - -
Bma04g00401 648 CDD VHS 2 132 - -
Bma04g00401 648 MobiDBLite consensus disorder prediction 444 464 - -
Bma04g00401 648 CDD GAT_GGA_like_plant 188 266 - -
Bma04g00401 648 MobiDBLite consensus disorder prediction 146 169 - -
Bma04g00401 648 MobiDBLite consensus disorder prediction 442 479 - -
Bma04g00401 648 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Bma04g00401 648 SUPERFAMILY ENTH/VHS domain 3 139 IPR008942 -
Bma04g00401 648 MobiDBLite consensus disorder prediction 298 320 - -
Bma04g00401 648 PANTHER TOM1-LIKE PROTEIN 1 640 IPR044836 GO:0035091|GO:0043130|GO:0043328
Bma04g00401 648 MobiDBLite consensus disorder prediction 268 331 - -
Bma04g00401 648 PANTHER TARGET OF MYB PROTEIN 1 1 640 - -
Bma04g00401 648 MobiDBLite consensus disorder prediction 599 618 - -
Bma04g00401 648 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Bma04g00401 648 SUPERFAMILY GAT-like domain 139 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00401 - - - qsu:112015330 746.888
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g01338 Bma04g00401 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02098 Bma-Chr1:77027712 Bma04g00401 Bma-Chr4:3274224 1.94E-106 dispersed
Bma04g00022 Bma-Chr4:275443 Bma04g00401 Bma-Chr4:3274224 8.45E-106 dispersed
Bma04g00401 Bma-Chr4:3274224 Bma10g00353 Bma-Chr10:3306496 8.30E-93 dispersed
Bma04g01231 Bma-Chr4:35875701 Bma04g00401 Bma-Chr4:3274224 2.34E-36 transposed
Bma09g00590 Bma-Chr9:43068934 Bma04g00401 Bma-Chr4:3274224 9.89E-23 transposed
Bma01g02552 Bma-Chr1:83171654 Bma04g00401 Bma-Chr4:3274224 0 wgd
Bma01g01338 Bma-Chr1:18629867 Bma04g00401 Bma-Chr4:3274224 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g320 Blo01g01770 Blo12g00760 Bda01g00727 Bda03g00425 Bpe02g01190 Bpe02g00174 Bma04g00401 . Cmo05g00626 Cmo12g00214 Cma01g01431 . . Car12g00245 Sed01g1279 Cpe07g00225 . Bhi04g00830 Tan02g2575 Cmetu03g2145 . Hepe10g0348 . Lcy13g1393 . . . . . . . . . Cone17ag1114 Cone20ag0607 Lsi04g02339 Csa03g04560 Chy04g00142 Cme03g01731 . Blo18g00073 Bda01g00944 . . Bpe04g00391 Bma01g01338 . . Cmo01g01480 . . Cma12g00261 . Car05g00543 Cpe11g00524 Cpe02g00517 Bhi09g02597 . . . Hepe01g2229 Mch11g0779 . Cla08g01232 Cam08g1690 Cec08g1269 Cco08g1390 Clacu08g1388 . Cre08g1173 Lsi08g01095 . Chy03g01237 Cme04g00382
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003825 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00401 Bma_Chr04 FPKM 44.397701 44.976067 62.323654 63.309528 10.935806 12.564978 11.474311 18.86928 18.288139 17.844757