Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00405 TTAATTGTTTCAGTGAGTTTTCAAGGCGCCCATTGTTCAGCAGCTCGGCTTGAGAAAATAGATGAAAATGGCAGTGTGAAGTGGGCCTTACCTTCATGTGTAACTCCTGAGACTCCAACTGAAGCCATGGAGTTTCTGGCTAGATCATGGAGTGTTTCTGCAATGGAGCTCTCAAAAGCTCTTTCCACTACAAATGATCCTTCTAACAGCATAGAGAAGTTAGCAGCCAGCTTTTCTGATGCTGAAACTCAGACTGAGACTGCTTATCCAAATTCTAATGCGTCAAAGGAACCTATAACTCAGCCCTTACAAGATGGAAGCAACCCTCCTGTTTCACCCAGAGACAGTGATGGCATGAAGGACCTGATATTGCTTCACCAAGTCTTCAATCCAGAGTTTGTCACCAGTCAGCAGCTACTTAGAAATGGGAGCATTATAAGTAAAACACTAGGGAAAGGAGCGAAAGATCAAAAGCAGAGGAAGAAGACGGAGACCAGAATTCAGACCGCTCAGTTGCACGCAGCCGTCTCTGTAGCCGGAGTAGCATCTGCTGTTGCGGCTCTTGCAGCTTCAATAGCATCGCCGGAAAACATCTCAGAACATCGAAAAATCCCGACCAAGATAGCCGGAGCGATTGCATCTGCTTCTGCCCTAGTTGCATCTCATTGTATTGAAATTGCAGAAGATTTTGGGGCAGATCATGTCCATATCTTGAAGGTCGTACACTCTGCAATCAGCGCGAAGAGTAATGGAGACATCATGGCCCTCACCGCCGGTGCTGCCACAGCCTTGCGAGGAGCAGCGATCCTCAGAGCGAGGCTTGAAAGAGGCAATGAAGCGATAAAATTCGCTTTATCAGAGATTAGGAAAGGAGAGACCCACGAATCCCAAATAATGGCTGCTCTGAACCATGTTTCTCGAGGAGGCGAACTTCTCAAACGTACCAGAAAAGGGGCTCTCCATTTGAAGCAGCTTTCTTTCAACGTGAATTCAAATTTGCAGGTGGTTGCGAAAATGAAAAGCAAGCACATAGCTGGAACATTTACGAAGAAGAAGAAGTGCATAGTGACCGGGTTGACGTGTGATGTTCGTGGTTGGGCTGGTCGGGAGAGGGAAGAAGGGACAGAGCCGAGGGCATACTTTGGAATAATATCGGGGGATAGAGTAATAGAATTCGAATGTGGTGGAAAAGATGATAAAAATTTGTGGACTGTTGGGATCAAACACATGTTGAATTGTCGTGCCTACATTACCACTTATATATGA 1266 46.05 LIVSVSFQGAHCSAARLEKIDENGSVKWALPSCVTPETPTEAMEFLARSWSVSAMELSKALSTTNDPSNSIEKLAASFSDAETQTETAYPNSNASKEPITQPLQDGSNPPVSPRDSDGMKDLILLHQVFNPEFVTSQQLLRNGSIISKTLGKGAKDQKQRKKTETRIQTAQLHAAVSVAGVASAVAALAASIASPENISEHRKIPTKIAGAIASASALVASHCIEIAEDFGADHVHILKVVHSAISAKSNGDIMALTAGAATALRGAAILRARLERGNEAIKFALSEIRKGETHESQIMAALNHVSRGGELLKRTRKGALHLKQLSFNVNSNLQVVAKMKSKHIAGTFTKKKKCIVTGLTCDVRGWAGREREEGTEPRAYFGIISGDRVIEFECGGKDDKNLWTVGIKHMLNCRAYITTYI 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3300293 3302421 + Bma018868.1 Bma04g00405 80774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00405 421 PANTHER PHOSPHOINOSITIDE BINDING PROTEIN 13 415 - -
Bma04g00405 421 PANTHER EXPRESSED PROTEIN 13 415 IPR040269 -
Bma04g00405 421 Pfam Plant pleckstrin homology-like region 310 414 IPR013666 -
Bma04g00405 421 MobiDBLite consensus disorder prediction 79 111 - -
Bma04g00405 421 Pfam Auxin canalisation 36 280 IPR008546 -
Bma04g00405 421 MobiDBLite consensus disorder prediction 79 117 - -
Bma04g00405 421 Gene3D - 297 417 IPR011993 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00405 - - - jre:109009499 434.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00405 Bma-Chr4:3300293 Bma06g01569 Bma-Chr6:51973516 5.82E-51 dispersed
Bma04g00405 Bma-Chr4:3300293 Bma02g00825 Bma-Chr2:44788118 8.96E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g305 . Blo12g00757 . . . . Bma04g00405 . . . Cma01g01434 . Car09g00562 . . . . . . . . . . . . . . . . . . . . . Cone20ag0601 Lsi04g02333 Csa03g04553 Chy04g00148 . . . . . . Bpe04g00396 . . Sed01g3987 Cmo01g01483 Cmo09g00617 Cma09g00636 . . . . Cpe02g00513 Bhi09g02582 Tan01g3937 Cmetu09g1599 . Hepe01g2223 Mch11g0774 . . . . . . . . . . . Cme04g00174
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010810 0 1 1 1 1 0 2 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 0 1 3 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00405 Bma_Chr04 FPKM 20.963108 22.655697 24.413895 23.314081 29.559034 33.171181 27.341461 39.612854 42.705692 36.894436