Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00408 TTGATGACAATGAGTACGGAAGAGACTCGGAGTAGCTTATACTCATTATCCTCGTCGTCTTCGACGGCTCAATCCCTTCAACACCCACTGTCCATTTCCTCGAGCTCAGACCCTAAAAAGACAAAGCGAATACGAGACTCGAGCAAACACCCGATTTATAGAGGAGTTCGCATGAGAAATTGGGGTAAATGGGTTTCTGAGATTCGCGAACCTAGAAAGAAATCTCGTATTTGGCTTGGAACCTTCCCTACCGCTGAAATGGCGGCAAGAGCACACGACGTCGCCGCTTTGAGCATCAAAGGTACCTCCGCCATTCTTAACTTCCCAGAACTTGCCGACTCCCTTCCTCGACCGGTTTCCATCGCTCGCCGGGACGTTCAAGCGGCGGCGGCGAAGGCCGCTCAGATGGAGATATTCGACTCTCCGCAGTCAATGTCATCTTCTTCTTCGCTGTCGTCGCTCGTGTCTATGATGGATTTGTCGTCCCCTCCAGCAACGAATGAATCAGAGGAGCTGAGCGAGATCCTGGAATTGCCTAGTCTGGGGAATGCATATGATTCGTACGAGTTGATCAGGGAGTTTGAGTTTTTTGACTCGGCGGATTGCTGGGCTTATCCGCCGCCATGGTTGCAGAGCATAGAGGAGTGTGGATACAACAATAAAGCAAGGGACGAGGTGGGGATCGGAGAGAGTAGCGAGTACGTTTTGTGGGATTACTGA 720 50.97 LMTMSTEETRSSLYSLSSSSSTAQSLQHPLSISSSSDPKKTKRIRDSSKHPIYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGTSAILNFPELADSLPRPVSIARRDVQAAAAKAAQMEIFDSPQSMSSSSSLSSLVSMMDLSSPPATNESEELSEILELPSLGNAYDSYELIREFEFFDSADCWAYPPPWLQSIEECGYNNKARDEVGIGESSEYVLWDY 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3312757 3313476 + Bma018871.1 Bma04g00408 80777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00408 239 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 12 222 - -
Bma04g00408 239 CDD AP2 51 111 IPR001471 GO:0003700|GO:0006355
Bma04g00408 239 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Bma04g00408 239 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Bma04g00408 239 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Bma04g00408 239 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Bma04g00408 239 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 222 - -
Bma04g00408 239 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Bma04g00408 239 MobiDBLite consensus disorder prediction 1 37 - -
Bma04g00408 239 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Bma04g00408 239 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Bma04g00408 239 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00408 Bma-Chr4:3312757 Bma07g00513 Bma-Chr7:6393305 3.68E-59 dispersed
Bma01g01347 Bma-Chr1:19155929 Bma04g00408 Bma-Chr4:3312757 2.47E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57151 PF00847 AP2 9.80E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00408 K09286 - tcc:18587975 250.751