Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00411 ATGTTGTTCTATGCTGGTAATGAGAAAATTTGGTTATATTACACTCAGTCGGAGTTAGTCTGTTTTTGCTTACGAAATTTGCAGTGGGAAGTAATGGCGGTGACTTCTTCGTGTAAGGACGCAAATAAGATAGCGATGGATAACGGGAAGTACGTAAGGTACACACCTGAACAAGTGGAAGCCCTAGAGAGGCTTTATTACGAATGCCCCAAACCCAGTTCCATTCGCCGCCAACAGCTTATCAAAGAATGCCCCATTCTGTCCAACATAGAGCCCAAGCAGATCAAAGTTTGGTTCCAAAACAGAAGGTGTAGAGAGAAGCAGCGGAAAGAATCGTCGCGACTGCAAGCAGTGAACAGGAAGCTAACAGCCATGAACAGGCTACTAATGGAGGAAAACGATCGTTTGCAGAAACAAGTATCGCAGCTGGTGTACGACAACACCTATTTTCGCCAGCAAACTCAAAATGCTGCTTTAGCCTCCACAGACACAAGCTGTGATTCGGTGGTGACGAGTGGTCAACACCATCAAACTCCTCAGCATCCATTAAAGGATGCCAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAGACTTTGACAGAGTTTATCTCAAAGGCTACCGGAACTGCTGTTGAGTGGGTCCAATTGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTAATAGTTCTGCTGGAGTGGCAGCACGTGCATGTGGCCTTGTCGGTTTAGAACCGACTAGGGTAATAATTTTTCATCTGGTCTTTCGTAATCGCAATCAAATTGTTATAATTTTATTGAGCGAATATCACTGTGAACAGGTCGCTGAAATCCTCAAAGATCGGCCTTCGTGGTTACGAGATTGCCGAGCCGTGGATGTTCTAAACGTGCTGTCCACAGGAAATGGTGGAACCATTGAACTTCTTTACATGCAGTTCTTTGCACCAACAACTTTGGCCCTTGCTCGTGATTTTTGGCTGATTCGCTACACTTCTGTTTTGGAAGATGGCAGCCTCGTGGTCTGTGAAAGATCACTTGACAATACTCAGAATGGTCCAAACATGCCACCAGTACAGAATTTTGTACGAGCAGAAATGCTGCCGAGCGGGTATTTGATTAGACCTTGTGAAGGGGGAGGATCGATTATTCGTATTGTTGATCATATGGATTTAGAGCCTAGGAGCGTTCCTGAAGTGTTACGCCCACTGTACGAGTCGTCCATTCTGCTTGCTCAGAGGACTACAATGGCCGCTTTGCGCCTTCTGAGGCAGATATCGCAAGAGATTTCTCAGCCGAATGTCTCGGGATGGGGAAAACGGCCGGCTGCACTACGCGGTCTCGGCCAAAAATTAATGAGGAGTTTTAACGAAGCCGTTAATGGGTTCACTGACGACGGATGGTCAATGCTCGAGAGCGATGGGGTTGATGATGTCACTCTTCTGGTTAACTCTTCCCCTTCCAAGATGATGGGAGGAGCTCTTCATTATGCCAATGGATTCCCATCAATGGCCTCAGCTGTTCTATGTGCCAAAGCTTCCATGTTATTTCAAGATGTTCCTCCGGCAATTCTTCTAAGATTTCTTCGAGAACACCGATCTGAATGGGCAGATAGTAGCATTGATGCTTATTCAGCTGCATCGATTAAAATGAGTCCACATGATGCCTTTCCTGGCTCTCAGCTCGGAACGTATGGTGGGCAGGTTATTCTTCCACTGGCTCACACCATCGAACATGAAGAGGCAAGCCGTCTTTTCGTTAAAATCGAAAATATCAGCCACTATCGTGATGACATGCTCATGCCTGGCGACATCTTCCTTCTGCAACTTTGCAGTGGAATGGATGAGAATTCTGTAGGCACATGTGCTGAACTCGTATTTGCTCCCATTGATGCCTCCTTTTCCGACGATGCGCCTATTTTATCTTCTGGATTTCGCATCATTCCTGTAGATTCAAAGATGGACACCACAAGTCCAAATCGAACTCTCGATCTTACCTCAGCTCTAGATGTCGGAAAGGAAGGAAGCAAAGGGTCGGGTGATTATGCCGTACAAAATGGAAAATCGAAATCGGTTTTGAGAATCGCCTTCCAATTTGCATTTCAAGCTCACCTTCAAGAGAATGTTGCAGCCATGGCCAGACAGTATGTGAGGAGAATCATAGCTTCTGTCCAGCGAGTGGCTTTCGCTCTCTCACCTGCACGTTTAGATTCTTTCTCATCTCTTCATTCCCCTCCTCAAACTCCCCAAGCTCTCACACTCACTCGATGGATCTGCCATAGCTACCGGTGCTTTCTTGGGGTGGAACTGCTGAAGAATGAAGAAAGTGATTCTCTTCTGAAAACCCTTTGGCATTACTCGGATGCAGTTATGTGCTGTTCTTTGAAGCCAGTTCCAGCTTTTACATTTGCAAATCAGGCAGGACTGGATATGCTAGAGACAACCTTAGTAGCTCTGAACGACATAACTCTGGAAATGATCTTTGATGACAATGGAAAGAAGACATTATGCTCTGAGTTCCCCCGCATACTTCAGCAGGCAAGTGCAGAAGAGTCTTTACTGTTAGGTTTTGTTTGCCTTCAAGCTGGGTTCTGCCTGTCGAGCATGGGGAGGTCGGTTTCATACGACAGAGCGGTGGCATGGAAGGTGTTGGATGAAGATGAAAATGTCCAGTCTATCTGCTTCATGTTCATCAACTGGTCTTTCGCCGAAAACTAG 2727 46.31 MLFYAGNEKIWLYYTQSELVCFCLRNLQWEVMAVTSSCKDANKIAMDNGKYVRYTPEQVEALERLYYECPKPSSIRRQQLIKECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNRLLMEENDRLQKQVSQLVYDNTYFRQQTQNAALASTDTSCDSVVTSGQHHQTPQHPLKDASPAGLLSIAEETLTEFISKATGTAVEWVQLPGMKPGPDSIGIVAISNSSAGVAARACGLVGLEPTRVIIFHLVFRNRNQIVIILLSEYHCEQVAEILKDRPSWLRDCRAVDVLNVLSTGNGGTIELLYMQFFAPTTLALARDFWLIRYTSVLEDGSLVVCERSLDNTQNGPNMPPVQNFVRAEMLPSGYLIRPCEGGGSIIRIVDHMDLEPRSVPEVLRPLYESSILLAQRTTMAALRLLRQISQEISQPNVSGWGKRPAALRGLGQKLMRSFNEAVNGFTDDGWSMLESDGVDDVTLLVNSSPSKMMGGALHYANGFPSMASAVLCAKASMLFQDVPPAILLRFLREHRSEWADSSIDAYSAASIKMSPHDAFPGSQLGTYGGQVILPLAHTIEHEEASRLFVKIENISHYRDDMLMPGDIFLLQLCSGMDENSVGTCAELVFAPIDASFSDDAPILSSGFRIIPVDSKMDTTSPNRTLDLTSALDVGKEGSKGSGDYAVQNGKSKSVLRIAFQFAFQAHLQENVAAMARQYVRRIIASVQRVAFALSPARLDSFSSLHSPPQTPQALTLTRWICHSYRCFLGVELLKNEESDSLLKTLWHYSDAVMCCSLKPVPAFTFANQAGLDMLETTLVALNDITLEMIFDDNGKKTLCSEFPRILQQASAEESLLLGFVCLQAGFCLSSMGRSVSYDRAVAWKVLDEDENVQSICFMFINWSFAEN 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3332220 3336684 + Bma018874.1 Bma04g00411 80780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00411 908 SMART HOX_1 47 113 IPR001356 GO:0003677
Bma04g00411 908 CDD homeodomain 50 110 IPR001356 GO:0003677
Bma04g00411 908 Pfam MEKHLA domain 756 905 IPR013978 -
Bma04g00411 908 PANTHER CLASS III HD-ZIP PROTEIN CNA1 276 905 - -
Bma04g00411 908 PANTHER CLASS III HD-ZIP PROTEIN CNA1 36 254 - -
Bma04g00411 908 Pfam Homeodomain 50 108 IPR001356 GO:0003677
Bma04g00411 908 CDD bZIP 102 141 - -
Bma04g00411 908 SUPERFAMILY Homeodomain-like 50 111 IPR009057 -
Bma04g00411 908 ProSiteProfiles 'Homeobox' domain profile. 45 109 IPR001356 GO:0003677
Bma04g00411 908 SMART START_1 193 429 IPR002913 GO:0008289
Bma04g00411 908 Gene3D - 43 116 - -
Bma04g00411 908 CDD START_ArGLABRA2_like 188 429 - -
Bma04g00411 908 ProSiteProfiles START domain profile. 184 412 IPR002913 GO:0008289
Bma04g00411 908 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 276 905 IPR044830 GO:0003700
Bma04g00411 908 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 36 254 IPR044830 GO:0003700
Bma04g00411 908 Pfam START domain 276 428 IPR002913 GO:0008289
Bma04g00411 908 Pfam START domain 194 252 IPR002913 GO:0008289
Bma04g00411 908 Gene3D - 263 425 IPR023393 -
Bma04g00411 908 SUPERFAMILY Bet v1-like 193 430 - -
Bma04g00411 908 Coils Coil 115 139 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02558 Bma04g00411 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00411 Bma-Chr4:3332220 Bma11g00442 Bma-Chr11:4998763 0 dispersed
Bma01g02558 Bma-Chr1:83240242 Bma04g00411 Bma-Chr4:3332220 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57153 PF01852 START 1.10E-37 CL0209 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00411 K09338 - tcc:18587987 1343.56