Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00422 ATGGCGGATTTGAACAATTGTGTCAAATTGCAGTATCTGGATCTAGGGAACAATTTCTTTTCAGGTTTTTTCCCGGACATATCTTCTCTCAGCGGATTGCAACATCTGCATTTGAATAACAGTGGTTTTTCCGGGCCTTTCCCGTGGAAATCGATCGGCAATGTGACTTCTTTGATTGGGTTGAGTGTTGGAGATAATAAGTTTGATAGAACTCCCTTTCCGATTGAGGTGGTTAGTCTCGAAAAGCTGAATTGGCTTTATATGAATAATTGCTCAATCGAAGGCCAGATTCCTCCGTCCATCGGAAACCTCACTCAACTCATTAATTTAGAACTCTCACACAATCTTCTGACCGGGAATATTCCGGCGGAGATCGGAAAACTCCGGAATCTCTGGCAACTCGAACTTTTCAATAACCAGTTGAACGGTAGTCTTCCAGTTGGTTTGAGAAACCTCACGGTCCTTGAGAACTTTGACGCTTCGATGAACAATCTTGAAGGAGAACTTTCTGAGTTGAGTTTTTTGAATAATCTTGTTTCTCTGCAACTCTACGGTGAAATTCCGGCGGAGTTTGGCGAATTCAAGATGCTTATAAAGCTTTCGCTGTACGGGAATCAGATGACCGGTCCTCTCCCTCAAACGCTGGGTTCTTGGAGTGAATTCATTTTCATTGACGTGTCTGAAAATTTGTTGACGGGCCAAATTCCGGCTGATATGTGCAAAAGAGGGACGATGAAGCAGCTCCTCATGCTTCAGAACAATTTCACGGGAAAAATTCCGGACACCTACGCTAATTGCTCCTCGTTGCTTAGATTTAGGGTGAGCAACAATTCCCTTTCCGACGTGGTCCCTGCCGGAATCTGGGGATTACCGAACGTCAATATCATCGACGTCGGATTAAACCAATTAGAGGGTCCAATTACTTCCAACATCCGTAACGCAGGGGCTCTCTGGCAATTGTACGTCGGAAACAATCGTTTCTCCGGCCATTTGCCAGCGGAGATTTCGAAAGCATCATCCCTAGTTACGATTGACCTGAGCTATAATCAGTTTTCAGGAGAAATTCCTGCGACAATTGGCAAACTATGGCGCTTAGGAAGTATTCTTTTGCATAACAATATGTTTTCAGGTCCAATTCCATCCACAATAGGTTCCTGTCGCTCACTCGGTGATTTAAATCTTGCTCAAAATTTTCTTTCCGGCCAAATTCCATCGTCTTTAGGAATTTTACCCGCTTTATACTCTCTGAATTTATCCCGAAACAAACTTACCGGTGAAATCCCCCAGAGTTTGTCATCACTGAAGCTAAGCCTGTTAGATCTTTCAAACAATCAATTAACAGGTTCGATACCGGATTCTCTATCGATCGAAGCGTACAACAGTAGTTTCGCCGGGAATCCTGGCCTCTGCAGTGTCGCCGTTCGCTATTTCCAGAGATGTTTCTTCAGTTCCGGAATATCTACCGACGCTCGAATGATGGTCATATGCTTTGCGGTAGGTTTAGTGCTTTTGCTGCTTTTCCTGACGTTCTTGGTCTACTTGAATAAGAAAGAGAGATTCAGAGACCGATCGTTGAAAGAAAAATCTTGGAACATGAAGTCCTTCCATATCTTAACATTCACCGAGGAAGAGATTCTCGACGCCATTAAAGAGGAGAATCTAATTGGAAAAGGCGGTTCAGGAAACGTGTACAAAGTCAAAGTCAATGACGGAAAAGAACTAGCCGTCAAACACATCAGAAACACCGACCAACACGGCCGGGAAAAGAACCCATCAGCGACGCCGATGGTCGGAAAACGGTCAGGAAAATCACGGCAATTCGATGCAGAGGTGGATACCTTGAGCTCCATCAGACATTTGAACGTGGTAAAGCTGTATTGCAGCATTACGAGCGATGATTCGAGCTTGCTGGTGTATGAATATTTGCCAAATGGAAGCTTGTGGGATAAGCTTCATAGGAGCCAGAAAATGGATTTGGATTGGGAAACGAGGTATGAAATTGCAGTGGGAGCTGCAAAGGGATTGGAGTATTTGCACCATGGGTGTGAGCAACCAGTTCTTCACAGAGACGTGAAATCTAGCAATATTTTGTTGGATGAAACCTTTAAACCCAAAATTGCTGATTTTGGGCTGGCCAAAATTGTTCAGACCAGTGAAGGTAATGATTCCACCCGTCCATTGTTTCATCTTCTCCTTCTTTACCACCTTTCTGATTCTACCCTATTCCATCGGTCTGTTTCGCCCATGGATTTCCGTTCTTTCTTTCTTCTTCTTCTTCTTTCTTTTGTATTTTCTTTTGCTTCTGGATCTCCGTCCATGGCTGCTAACCAGTCTCAGTTTTTTGTTCTCGTGAAAAAGTGTGTCTCCGGGAGCTACTTGTCGAGTTGGGATGTCGCGGGAAGAACAGAAGCTTTCTGCAATTTCACTGGAATCTCCTGTGATGATAGGGGTTATGTGATCGGGATCAATGTCTACGGCTGGTCGCTTTCCGGCAGTTTCCTGGCGGACGTCTGCATGTATTTGCCGGAGCTGCGTGTACTTCGTCTCGGAGGAAGTGGCCTAGATGGAACCTTTCCTCGAGGTATCTCTAACTGCTCCCGGTTGGAAGAGCTGGACCTGAGTTATCTCCATCTTACCGGAGAAATTCCAGACCTCTCGCCGATGAAGTCTCTACGAGTTCTCGACATGTCGTACAACCACTTCGTCGGTGACTTTCCGATCTCGGTTTTTTCCCTGACGAATTTGGAGAGTCTGAATTTCAATGAAGACGACGGTTTGAACTCGTGGCAACTTCCGGAAAATATATCAGAGATGAAAAAGCTCAAATCCATGGTTTTGACGACGTGCATGTTACGGGGTCGGATTCCACCGGAGATCGGCAAGCTGACCTCTCTCGTCGACCTAGAGTTGAGCGGGAATTTTCTCTACGGCCAAATTCCGAAGGAAATCTCATTATTGAAAAATCTGAAGCAACTCGAGCTTTACTATAATCAACTCGACGGCGACATTCCTGAGGAGATTGGAAACCTGACCGAGCTCAGAGATTTAGACATGTCGGTCAACCTGCTGACCGGAAAGCTTCCCAAATCAATTTGTCGTCTTCCTCATTTGGAAGTTCTCCAGCTTTATAATAATAGCCTCACCGGAGAAATTCCAACTGAAATTGCCAATTCAAAGACGTTAACCATGCTATCACTTTATCACAATTTTCTCACCGGAAATGTACCAAAAAATTTGGGCCGGTTTTCTCCTTTGACTGGTCTTGATTTGTCGGAAAATAAGCTCTCCGGCTCTTTGCCGGTGGAGGTCTGCAGAGGAGGTCAGTTGAAGTATTTTCTAGTTCTTCAAAATAAATTTACAGGAGAAATACCTGAAATTTACGCAGACTGCAAGTCTCTTATTCGTTTTCGTGTTAGTTCTAATGCACTGGAGGGTCCAATACCAGAAGGAATCCTTGATCTTCCCCATGTTTGGCTACTCGATTTTAGTTTTAATAATCTGAGTGGGAGAATTCCTTCTTCTGTAAATGCGAGAAATTTGTCGCAGCTGTTCATGCAGAACAACAGGATTTCAGGGGTCATACCGCCTGAAATTTCCCGAGCTACCAGCTTGGTGAAGATTGATTTAAGTAGTAATCTTCTTTCTGGTCCGATTCCCTCGGAAATTGGGAGCTTGAAGAACCTAAATTTGCTGCTTTTGAAAGGAAATAAGCTCAGTTCCTCCATACCTGTTTCTCTCTCTTCACTGAAATCTCTGAACGTTCTCGACGCCTCCGATAATCTCCTCACCGGAAATATCCCGGAGAGTCTCTTCGAGTTGTTGCCTAACTCCATCAATTTCTCCAACAATCAACTTTCAGGCCCAATTCCTCTCTCTCTAATCAAAGGAGGGTTAGCAGAAAGCTTTTCCGGCAATCCAGCACTCTGCGTTTCAGTTTACCTCAACTCCTCCGATCTAAATTTCTCCATTTGCTCAAAAAAACACAGCCAGAAAAAGACGAATTCCATCTGGGTGCTCGGAATTTCAGGGTTCATCATCCTCATCGGAGCTCTGCTATTTCTGAAACGCCGATTAAGCAGAGAAAAATCAGCATCCGAACAAGAAGAAACGCTTTCTTCATCTTTCTTCTCCTACGACGTAAAAAGCTTCCACCGCATAAGCTTCGACCAGCGGGAAATAATCGAATCCATGGTCCCAAAAAACATCGTCGGCCATGGCGGATCAGGAACAGTGTACAAAATCGAACTAAAAAGCGGAGAAGTGGTGGCGGTGAAGAGGCTATACAGCCAAAAGACAAAAGACGAGCTAATACTAGACAAAGAATCAAAAACAGAGGTGGAAACTCTAGGAAGTATAAGGCACAAAAACATAGTGAAATTATACTGCTATTTATCGAGCTTAGATTGCAGGCTTCTTGTTTATGAATACATGAAGAACGGCAATCTCTACGACGCCTTACACAAAGGGTGGGTGCATTTGGATTGGGCGATTCGCCATCAGATCGCGCTTGGCGTGGCGCAGGGGCTGGCCTATCTGCACCACGATTTGGTGCCGCCGATCATTCACCGGGACATAAAGACGACGAATATTCTGTTGGACGTGAATTACCAGCCGAAAGTTGCAGATTTTGGAATAGCCAAGGTTTTACAAGCAAGAGGGAAAGACTCTACCACCACTGTAATTGCCGGGACTTATGGCTATTTAGCACCTGAATATGCATATTCGTCGAAAGCAACTACGAAATGCGATGTCTACAGCTTCGGAGTGGTGTTAATGGAGCTGGTAAGTGGGAAGAAGCCAGTGGAGGAGGAGTTCGGGGAGAATAAGAATATAGTAGGCTGGATTTCGAATATGGTGGAAACCAAGGAGGGAGCAATGCAGGTTTTGGACAAGAGTTTATTAGGGTTTTGGGGAGAAGAAGAAATGATCCAGGCTCTGAAAATCGCCATTAGAGCGACCTCGAACAATCCTTCTCTCCGTCCCTCCATGAAAGAAGTGGTTCAGCTGCTGATCGAGGCAGACCCTTGTAGGAACAGCAGTAAGACCAAGGACGACGCCTCCAATGGATCCAAAATCAAGACCCACGTCGAATTCTGA 5097 44.81 MADLNNCVKLQYLDLGNNFFSGFFPDISSLSGLQHLHLNNSGFSGPFPWKSIGNVTSLIGLSVGDNKFDRTPFPIEVVSLEKLNWLYMNNCSIEGQIPPSIGNLTQLINLELSHNLLTGNIPAEIGKLRNLWQLELFNNQLNGSLPVGLRNLTVLENFDASMNNLEGELSELSFLNNLVSLQLYGEIPAEFGEFKMLIKLSLYGNQMTGPLPQTLGSWSEFIFIDVSENLLTGQIPADMCKRGTMKQLLMLQNNFTGKIPDTYANCSSLLRFRVSNNSLSDVVPAGIWGLPNVNIIDVGLNQLEGPITSNIRNAGALWQLYVGNNRFSGHLPAEISKASSLVTIDLSYNQFSGEIPATIGKLWRLGSILLHNNMFSGPIPSTIGSCRSLGDLNLAQNFLSGQIPSSLGILPALYSLNLSRNKLTGEIPQSLSSLKLSLLDLSNNQLTGSIPDSLSIEAYNSSFAGNPGLCSVAVRYFQRCFFSSGISTDARMMVICFAVGLVLLLLFLTFLVYLNKKERFRDRSLKEKSWNMKSFHILTFTEEEILDAIKEENLIGKGGSGNVYKVKVNDGKELAVKHIRNTDQHGREKNPSATPMVGKRSGKSRQFDAEVDTLSSIRHLNVVKLYCSITSDDSSLLVYEYLPNGSLWDKLHRSQKMDLDWETRYEIAVGAAKGLEYLHHGCEQPVLHRDVKSSNILLDETFKPKIADFGLAKIVQTSEGNDSTRPLFHLLLLYHLSDSTLFHRSVSPMDFRSFFLLLLLSFVFSFASGSPSMAANQSQFFVLVKKCVSGSYLSSWDVAGRTEAFCNFTGISCDDRGYVIGINVYGWSLSGSFLADVCMYLPELRVLRLGGSGLDGTFPRGISNCSRLEELDLSYLHLTGEIPDLSPMKSLRVLDMSYNHFVGDFPISVFSLTNLESLNFNEDDGLNSWQLPENISEMKKLKSMVLTTCMLRGRIPPEIGKLTSLVDLELSGNFLYGQIPKEISLLKNLKQLELYYNQLDGDIPEEIGNLTELRDLDMSVNLLTGKLPKSICRLPHLEVLQLYNNSLTGEIPTEIANSKTLTMLSLYHNFLTGNVPKNLGRFSPLTGLDLSENKLSGSLPVEVCRGGQLKYFLVLQNKFTGEIPEIYADCKSLIRFRVSSNALEGPIPEGILDLPHVWLLDFSFNNLSGRIPSSVNARNLSQLFMQNNRISGVIPPEISRATSLVKIDLSSNLLSGPIPSEIGSLKNLNLLLLKGNKLSSSIPVSLSSLKSLNVLDASDNLLTGNIPESLFELLPNSINFSNNQLSGPIPLSLIKGGLAESFSGNPALCVSVYLNSSDLNFSICSKKHSQKKTNSIWVLGISGFIILIGALLFLKRRLSREKSASEQEETLSSSFFSYDVKSFHRISFDQREIIESMVPKNIVGHGGSGTVYKIELKSGEVVAVKRLYSQKTKDELILDKESKTEVETLGSIRHKNIVKLYCYLSSLDCRLLVYEYMKNGNLYDALHKGWVHLDWAIRHQIALGVAQGLAYLHHDLVPPIIHRDIKTTNILLDVNYQPKVADFGIAKVLQARGKDSTTTVIAGTYGYLAPEYAYSSKATTKCDVYSFGVVLMELVSGKKPVEEEFGENKNIVGWISNMVETKEGAMQVLDKSLLGFWGEEEMIQALKIAIRATSNNPSLRPSMKEVVQLLIEADPCRNSSKTKDDASNGSKIKTHVEF 1698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3406792 3414153 - Bma018887.1 Bma04g00422 80791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00422 1698 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 754 1682 - -
Bma04g00422 1698 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 2 408 - -
Bma04g00422 1698 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 368 725 - -
Bma04g00422 1698 MobiDBLite consensus disorder prediction 1677 1698 - -
Bma04g00422 1698 SMART LRR_typ_2 986 1010 IPR003591 -
Bma04g00422 1698 SMART LRR_typ_2 80 104 IPR003591 -
Bma04g00422 1698 SMART LRR_typ_2 841 865 IPR003591 -
Bma04g00422 1698 SMART LRR_typ_2 410 434 IPR003591 -
Bma04g00422 1698 SMART LRR_typ_2 1034 1058 IPR003591 -
Bma04g00422 1698 SMART LRR_typ_2 128 152 IPR003591 -
Bma04g00422 1698 SMART LRR_typ_2 888 912 IPR003591 -
Bma04g00422 1698 SMART LRR_typ_2 1249 1273 IPR003591 -
Bma04g00422 1698 SMART LRR_typ_2 1082 1106 IPR003591 -
Bma04g00422 1698 Gene3D Ribonuclease Inhibitor 779 925 IPR032675 -
Bma04g00422 1698 ProSiteProfiles Protein kinase domain profile. 549 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00422 1698 Gene3D Phosphorylase Kinase; domain 1 1380 1476 - -
Bma04g00422 1698 ProSitePatterns Protein kinases ATP-binding region signature. 555 577 IPR017441 GO:0005524
Bma04g00422 1698 SUPERFAMILY L domain-like 183 284 - -
Bma04g00422 1698 SMART serkin_6 1397 1677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00422 1698 SMART serkin_6 549 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00422 1698 SUPERFAMILY Protein kinase-like (PK-like) 1389 1670 IPR011009 -
Bma04g00422 1698 SUPERFAMILY Protein kinase-like (PK-like) 534 720 IPR011009 -
Bma04g00422 1698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1520 1532 IPR008271 GO:0004672|GO:0006468
Bma04g00422 1698 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 754 1682 - -
Bma04g00422 1698 Pfam Protein kinase domain 551 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00422 1698 Pfam Protein kinase domain 1400 1668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00422 1698 MobiDBLite consensus disorder prediction 580 604 - -
Bma04g00422 1698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 686 698 IPR008271 GO:0004672|GO:0006468
Bma04g00422 1698 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 408 - -
Bma04g00422 1698 Gene3D Ribonuclease Inhibitor 926 1030 IPR032675 -
Bma04g00422 1698 SUPERFAMILY L domain-like 1034 1292 - -
Bma04g00422 1698 ProSiteProfiles Protein kinase domain profile. 1397 1677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma04g00422 1698 Gene3D Transferase(Phosphotransferase) domain 1 1477 1695 - -
Bma04g00422 1698 PANTHER RECEPTOR PROTEIN-TYROSINE KINASE CEPR1 368 725 - -
Bma04g00422 1698 ProSiteProfiles Leucine-rich repeat profile. 435 457 IPR001611 GO:0005515
Bma04g00422 1698 ProSitePatterns Protein kinases ATP-binding region signature. 1403 1425 IPR017441 GO:0005524
Bma04g00422 1698 SUPERFAMILY RNI-like 822 1121 - -
Bma04g00422 1698 Gene3D Ribonuclease Inhibitor 247 480 IPR032675 -
Bma04g00422 1698 Gene3D Ribonuclease Inhibitor 1040 1318 IPR032675 -
Bma04g00422 1698 Gene3D Ribonuclease Inhibitor 2 246 IPR032675 -
Bma04g00422 1698 Gene3D Transferase(Phosphotransferase) domain 1 532 729 - -
Bma04g00422 1698 SUPERFAMILY L domain-like 5 456 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00422 Bma-Chr4:3406792 Bma02g00197 Bma-Chr2:1885280 5.94E-12 dispersed
Bma14g00209 Bma-Chr14:2583383 Bma04g00422 Bma-Chr4:3406792 1.94E-09 transposed
Bma01g02569 Bma-Chr1:83310675 Bma04g00422 Bma-Chr4:3406792 1.91E-14 wgd
Bma02g00096 Bma-Chr2:841950 Bma04g00422 Bma-Chr4:3406792 1.42E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66440 PF00069 Pkinase 9.60E-48 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00422 - - csv:101222864 1328.54