Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00423 ATGGCTGAGAGAAGGCGAAGAAAGAGATTGAACGACCGTCTTTCCATGCTAAGATCCATCGTTCCAAAAATAAGCAAGATGGAGAGAACAGCCATACTAGGAGACGCCATTGATTACACGAAAGAACTTCTGGAAAAAATCAACAACTTGCAGCAAGAGATTGAAATGGATTCTAACCACCACCAGGTCCAGATGAGCGTTTTCAAGAATGTCAACCCAAATGAGTTTCTACCCACAAATCCACCAAAGTTTGATGTAGAAAGGAGAAAAGAAGACACTCGGATAGAGATTCTCTGTTCCAGTAAATATGGGATGTTGTTATCCACAGTGAACGCCATTGAAGCACTAGGCCTCGAGATTCAGCACTGTGAACTGGAGCGTAGAGACTTGATAAGCCAAGAGGAAATCAAACAAGCTTTACTTCAAAACTCAGGATATGAAGGAAGATGCCTTCAAAGTGTTTGA 465 41.94 MAERRRRKRLNDRLSMLRSIVPKISKMERTAILGDAIDYTKELLEKINNLQQEIEMDSNHHQVQMSVFKNVNPNEFLPTNPPKFDVERRKEDTRIEILCSSKYGMLLSTVNAIEALGLEIQHCELERRDLISQEEIKQALLQNSGYEGRCLQSV 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3423204 3424017 - Bma018889.1 Bma04g00423 80792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00423 154 Gene3D - 1 59 IPR036638 GO:0046983
Bma04g00423 154 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 151 - -
Bma04g00423 154 PANTHER DNA BINDING PROTEIN 1 151 - -
Bma04g00423 154 Pfam Helix-loop-helix DNA-binding domain 2 43 IPR011598 GO:0046983
Bma04g00423 154 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 66 IPR036638 GO:0046983
Bma04g00423 154 SMART finulus 1 49 IPR011598 GO:0046983
Bma04g00423 154 Coils Coil 40 60 - -
Bma04g00423 154 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 43 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g00102 Bma04g00423 CCT
Bma01g01364 Bma04g00423 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00423 Bma-Chr4:3423204 Bma15g01082 Bma-Chr15:43172903 3.46E-34 dispersed
Bma01g01364 Bma-Chr1:20572559 Bma04g00423 Bma-Chr4:3423204 1.91E-38 wgd
Bma02g00102 Bma-Chr2:926035 Bma04g00423 Bma-Chr4:3423204 5.97E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57154 PF00010 HLH 4.10E-09 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00423 - - csin:114263443 197.593