Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00426 GTGGTGATGGATAATGGCATATTGCAAGTAACATTATCTAACCCGGAGGGAATTGTTACTGGAATACAGTATAATGGTGTTGACAATCTGCTTGAAATTCTTAACAACGAATCAAATAGAGGGTATTGGGACCTTGTTTGGAGCGCACCAGGGGGCAAAGGAATATTTGATGTGATTAAAGGAACACGTTTCAGGGTGGTTGTAGAAAATGAAGAACAGGTGGAACTCTCATTTACGAGAATGTGGGAGCCTTCTCTTGCAGGCAAGGTTGTTCCTTTAAATATTGACAAAAGGTTTATCATGCTACGCGGTTCCTCGGGGTTTTATTCCTATGGAATTTATGAGCACTTAAAGCAGTGGCCTGATTTTGACCTTGGGGAAACCAGAATCGCGTTCAAACTCAGAAAAGACAAGTTTCAGTACATGGCAGTAGCAGACAACAGGCAAAGATTCATGCCTCTGCCTGATGACCGGCTAATTCCAAGATGCCAAACATTAGCTTATCCAGAAGCCGTTCTGCTCACCAATCCTAAAAATAAAGAACACAAAGGCGAGGTGGATGACAAATATCAGTATTCATGCGAGAACAAAGATCTAAGAGTTCATGGATGGATTTGCACCAATCCACCCACAGGGTTCTGGCAGATTACCCCAAGTGATGAATTTCGGTCTGGTGGACCCCTCAAACAGAATCTAACATCACACGTGGGGCCAACCACCCTAGCTGTCTTTCTCAGTGGTCACTATGCTGGACAGGATTTGGTGCCGAAATTTAGAAATGGGGAACCATGGAAGAAGGTGTTTGGCCCTGTTTTTATTTATCTTAATTCCACAAAAGCTGAAGATGATTCATTATGGTTGTGGGAGGATGCTAAGATACAGATGATGACTGAAGTCCAAGGCTGGCCATATAGTTTTCCTGCTTCTAGGGATTTCCCAAAATTAGATCAGCGAGGTAATGTTCGTGGAAGGGTACTTGTCCGTGATAGCAAAACCAACATACCGGCAAGTGGTGCCTATGTTGGCTTAGGCCCACCTGGAGATGTAGGATCATGGCAGAGAGAGTGCAAGGATTATCAATTTTGGACGAGAGCAGATAATGATGGCTGTTTTACTATTAACCATGTCCGTGCTGGAGACTATAATCTTTACTCATGGGTCCCTGGCTTTATTGGAGACTACCATTTTGATGCTGTCATCACCATAGTGCCTGAATCTTTCATCGAAATGGGCGATCTTGTATATCAACCGCCAAGAAGTGGGCCAACTTTGTGGGAAATAGGCATACCTGATCGTTCCGCTGCTGAGTTTTTTGTTCCTGATCCCAATCCGTCCCATATGAATAATCTATTTGTCAATCATCCTGACAGGTTCAGACAGTATGGTTTATGGGAGAGATACACAGAATTGTATCCTCACGATGATTTGATTTACACAGTTGGTGTTAGTGACTTTAGTAAGGATTGGTTCTTTGCCCAGGTGCCCAGGAAGATAGACAATAATACATATCAAGGAACTACTTGGCAAATCAAATTTAATCTTGACAGTGTCAATCAGAAAACCATTTACACGCTCCGAGTTGCAATCGCCTCAGCTACTTTAGCTGAACTGCAGGTTCGGGTTAATGATCCTGGATCTAGGCGACCTTTATTCACCACGGGTTTGATAGGGAGAGACAATTCAATAGCAAGGCTTGGAATTCATGGCCTTTACTGGCTGTACAGTGTGGATATATCGGGTTCGAATCTTGTGGAAGGGGACAATACAATCTTTTTTACACAACCACGATGCACCAGTCCTTTCCAAGGTATCATGTATGATTATATTCGTTTAGAAGGGCCTCCTTATTGTAGTTCTTAG 1860 43.06 VVMDNGILQVTLSNPEGIVTGIQYNGVDNLLEILNNESNRGYWDLVWSAPGGKGIFDVIKGTRFRVVVENEEQVELSFTRMWEPSLAGKVVPLNIDKRFIMLRGSSGFYSYGIYEHLKQWPDFDLGETRIAFKLRKDKFQYMAVADNRQRFMPLPDDRLIPRCQTLAYPEAVLLTNPKNKEHKGEVDDKYQYSCENKDLRVHGWICTNPPTGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGQDLVPKFRNGEPWKKVFGPVFIYLNSTKAEDDSLWLWEDAKIQMMTEVQGWPYSFPASRDFPKLDQRGNVRGRVLVRDSKTNIPASGAYVGLGPPGDVGSWQRECKDYQFWTRADNDGCFTINHVRAGDYNLYSWVPGFIGDYHFDAVITIVPESFIEMGDLVYQPPRSGPTLWEIGIPDRSAAEFFVPDPNPSHMNNLFVNHPDRFRQYGLWERYTELYPHDDLIYTVGVSDFSKDWFFAQVPRKIDNNTYQGTTWQIKFNLDSVNQKTIYTLRVAIASATLAELQVRVNDPGSRRPLFTTGLIGRDNSIARLGIHGLYWLYSVDISGSNLVEGDNTIFFTQPRCTSPFQGIMYDYIRLEGPPYCSS 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3436560 3440809 + Bma018892.1 Bma04g00426 80795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00426 619 SUPERFAMILY Starch-binding domain-like 314 402 IPR013784 GO:0030246
Bma04g00426 619 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 617 - -
Bma04g00426 619 SUPERFAMILY Galactose mutarotase-like 5 280 IPR011013 GO:0003824|GO:0005975|GO:0030246
Bma04g00426 619 Pfam Rhamnogalacturonate lyase family 1 186 IPR010325 -
Bma04g00426 619 Gene3D - 1 302 IPR014718 GO:0030246
Bma04g00426 619 CDD RGL4_C 425 612 - -
Bma04g00426 619 Pfam Polysaccharide lyase family 4, domain II 337 404 IPR029413 -
Bma04g00426 619 CDD RGL4_N 1 284 - -
Bma04g00426 619 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 617 - -
Bma04g00426 619 Gene3D - 315 399 - -
Bma04g00426 619 Pfam Polysaccharide lyase family 4, domain III 423 611 IPR029411 -
Bma04g00426 619 Gene3D - 420 612 - -
Bma04g00426 619 CDD RGL4_M 317 413 IPR029413 -
Bma04g00426 619 SUPERFAMILY Galactose-binding domain-like 420 612 IPR008979 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01389 Bma-Chr1:21823098 Bma04g00426 Bma-Chr4:3436560 1.50E-63 dispersed
Bma04g00426 Bma-Chr4:3436560 Bma07g00011 Bma-Chr7:1122208 0 dispersed
Bma04g00426 Bma-Chr4:3436560 Bma02g00119 Bma-Chr2:1127218 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00426 K18195 - jre:109004812 1070.84