Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00429 ATGGGGGAGATGGAGGCTGACGGAACTGCGATAACCGGCGTGAAGTTATCATCCGTAGTTCCGTCGAGGGTCACCGGAGAAGACAAGGTTCATGAGCTGTCTAACATGGATTTGGGGGTGAAGCTTCATAAAATAAAAGGGGTTTATTTCTTCAGAAGCGAAGCAGTTAAAGGGCTGACGATTCTCGATCTGAAAGAACCGATGTTTCCCTGGCTAGACCTTTACTATAAGGTCTCCGGCAGGATCAGGAAATCCGAAGAGGGAAGATATCTGATTAAGTGTAACGATGGGGGCGTGAGAATCGTGGAAGCTGACTGTGGTCAAACAATGGAGCAATGGCTGGCTTTAGCAGTGAATGACTCTGAGCTCTATCGTGTTCTTGGTTACAATCAGCTTCTTGGTCCTGATCTGGGTTTCTCTCCTCTGGTTTTTGTTCAGTTCACTAGGTTCAAATGTGGAGGAATGTCAGTGGGCCTCAGCTGGGCCCATGTGCTGGGAGACGCTTTCTCTGCTTCTGATTTCATCAACTCGTGGGGTCAGTTCATGTCAGGTAGCCGACCGTCGGAGCCTCTTAGGGCTGTTAATTCCGAGCAGGTGATCGACTCAACCCCGACGCTTGCTCAAAAGCCATTTTCGGTCAGACGGGTCGACCCGATCGGAGAATCGTGGTCAGCGCCGAATGAACGTAAACTAGAAACACACTCGTTTCATCTAACTGGGGAAGAAGTCGACCGCATGGCATCGAGCGTCTATGACCGGAACCTAAGGCCGGAATCCTCGTATTTTGTAGCGCTCTCTGCAATTATATGGAAGTCTCTGTCAAAGATTCGAGACGATTCAGGTCCGAGAATAGTGACGATTTGTAACAGCAATCGTCCAAATAGAGAAAACGAGCAGCCTCGAAACGGCATGATTTTGAGCACAGTTGAAGCAGATTCCATGGTTTTTAAATACCAAGAAGCGGATTTAGCGAAGCTGATTATGGAGAAGAAGGTGTGTGAAAACGCAGCGATTGAAGAAATGGTAGAGAGAGAGAGAGGAGAATCTAACCTGATACTGTATGGAGCGAGACTGACATTTGTAAACCTGGAGGAAGCGAATATCTACGGGCTGGAACTGAAGGGGGAGAAGCCCGTTATGGCAAATTATGTTATGGAAGGAGTTGGCGATGAGGGGGTGGTTCTGGTGCTTCCAAACCCTAAAAATGGAGGGGAAGAAGAAGGTAGAAATAATAATGGAAGAACAGTGACAGTAATTCTGCCCCCGAGTCAAATTGTTCTTCTCAAAAATGAGCTCGAGCAGACATGGAGCGTTATTTGA 1320 47.65 MGEMEADGTAITGVKLSSVVPSRVTGEDKVHELSNMDLGVKLHKIKGVYFFRSEAVKGLTILDLKEPMFPWLDLYYKVSGRIRKSEEGRYLIKCNDGGVRIVEADCGQTMEQWLALAVNDSELYRVLGYNQLLGPDLGFSPLVFVQFTRFKCGGMSVGLSWAHVLGDAFSASDFINSWGQFMSGSRPSEPLRAVNSEQVIDSTPTLAQKPFSVRRVDPIGESWSAPNERKLETHSFHLTGEEVDRMASSVYDRNLRPESSYFVALSAIIWKSLSKIRDDSGPRIVTICNSNRPNRENEQPRNGMILSTVEADSMVFKYQEADLAKLIMEKKVCENAAIEEMVERERGESNLILYGARLTFVNLEEANIYGLELKGEKPVMANYVMEGVGDEGVVLVLPNPKNGGEEEGRNNNGRTVTVILPPSQIVLLKNELEQTWSVI 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3530291 3532477 - Bma018897.1 Bma04g00429 80798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00429 439 Gene3D - 220 432 IPR023213 -
Bma04g00429 439 Pfam Transferase family 12 433 - -
Bma04g00429 439 Gene3D - 10 213 IPR023213 -
Bma04g00429 439 PANTHER PROTEIN ECERIFERUM 2 10 436 - -
Bma04g00429 439 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00429 - - - dzi:111315528 467.618
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00058 Bma-Chr4:544434 Bma04g00429 Bma-Chr4:3530291 2.99E-27 dispersed
Bma04g00429 Bma-Chr4:3530291 Bma05g01296 Bma-Chr5:52301270 3.57E-112 dispersed
Bma04g00429 Bma-Chr4:3530291 Bma04g01163 Bma-Chr4:30046488 3.46E-112 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g523 . . . Bda03g00453 . Bpe04g00416 Bma04g00429 . . . Cma01g01476 . . . . . . . . . . . . . . . . . . . . . Cone7ag0861 . . Lsi04g02282 Csa03g04496 Chy04g00203 . . . Bda11g00803 . . . . . Sed13g1533 Cmo01g01531 . . . . . . Cpe02g00477 Bhi09g02503 Tan01g3855 Cmetu04g0115 . Hepe01g2172 Mch11g0712 . . . . . . . . . . . Cme04g00234
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010250 2 1 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00429 Bma_Chr04 FPKM 0.146054 0.21437 0.666291 1.314686 0.183929 0.462876 0.443409 0.0 0.0 0.232358