Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00431 ATGGAAGCTCTACCTTTCCGTTCTTCCCCTTCTTCATCGTTTTTCTCTTTCGGAGCATCCGCTTCCATTTCCGGGAGCTCTGATACCCGACCTTCACGCTTGTTCTTGCCTTTTGGTCGCCTAGCAATGCGCAGCCTCGAGGCCGCCTGTGCCGCCGAGACAGTCAACGCGACACCGTCTCCATCTGATTTTTTGCCTCCAGAGAAGCTCAAAGCCAAGGAGGTGAAGCTCTGGGGTGGTCGATTTGAGCAGAGCGTCACCGATGCCGTTGAACGCTTCACCGAGTCCGTATCGTTTGATAAGGAGCTTTATAAGCATGATATTATGGGGAGCAGGGCTCATGCTTCTATGCTGGCAAAGCAGGGGCTTATGACTGTCATCGAAAGAGACAGTATTCTTGAAGGTCTTGATGTGATCGAGAGGCAAATTGTGAACGGTGAGTTTGTTTGGAGAAGTGATAGGGAAGATGTGCACATGAACATAGAAGCCGCACTTACAGACATGATTGGAGAACCTGCTAAGAAACTGCATACTGCTAGGAGCAGAAATGACCAAGTTCTGACTGATTTTCGGTTATGGTGTCGTGATGCAATTGATGCAATTTTGGAGCGAATTAAGTACCTCCAGGTTGCATTAGTTACCGTGGCATTGAAGAACAAGGATATTATTGTTCCAGGTTATACACATTTACAGAGGGCACAACCTATTTTACTCCAGCATCTTCTATTGGCATTCGTTGAACAGCTTGAACGGGATGGTGGTCGCTTACTAGATTGTAGAGTCAGGCTAAATTTTTGCCCATTAGGTGCATGTGCTTTGGCTGGCACAGGCCTTCCGATTGATAGGTTTATGACTTCTAATGCATTAGGATTTACTGCTCCCATGAGAAACAGTATCGATGCAGTTTCAGACCGAGATTTTGCTTTGGAGTTTCTTTCTGCTAATTCTATCACTGCAATGCATCTGTCCCGGCTTGGCGAGGAATGGGTGTTGTGGGCTTCTGAAGAGTTTGGATTTATCACACCCAGTGACTCGGTTTCTACTGGAAGTAGTATAATGCCTCAAAAGAAAAATCCAGATCCAATGGAACTGGTACGTGGGAAGTCTTCTAGAGTCATAGGAGATTTGATGACTGTTTTGACATTGTGCAAAGGCCTGCCTCTTGCTTATAATCGGGATTTGCAGGAAGACAAGGAACCTGTATTTGACAGTGTAAAGACAATTTTGGGAATGCTTGAAGTGTCAGCGGAGTTTGCCCAAAATATTACTTTTAATCAGGGGGTACCTTTTAGGACTTCTCATGATATAGTTGGCAAATGTGTTGCCATTTGCGTCGGAAGACGCTGCCAGCTTCAGGATTTACAGCTGGATGAGCTAAGAAGTATAAATCCCGTGTTTGATGAGGACGTGTATAGTTTTCTTGGAGTAGAGAACGCAATAAAAAATTTCAGCTCCTACGGATCCACAGGCGCAGATTGTGTCGCCAGTCAGATTGATTTCTGGGTTACAAGACTTGGAATCAGCCAATAG 1530 45.42 MEALPFRSSPSSSFFSFGASASISGSSDTRPSRLFLPFGRLAMRSLEAACAAETVNATPSPSDFLPPEKLKAKEVKLWGGRFEQSVTDAVERFTESVSFDKELYKHDIMGSRAHASMLAKQGLMTVIERDSILEGLDVIERQIVNGEFVWRSDREDVHMNIEAALTDMIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDAILERIKYLQVALVTVALKNKDIIVPGYTHLQRAQPILLQHLLLAFVEQLERDGGRLLDCRVRLNFCPLGACALAGTGLPIDRFMTSNALGFTAPMRNSIDAVSDRDFALEFLSANSITAMHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSSRVIGDLMTVLTLCKGLPLAYNRDLQEDKEPVFDSVKTILGMLEVSAEFAQNITFNQGVPFRTSHDIVGKCVAICVGRRCQLQDLQLDELRSINPVFDEDVYSFLGVENAIKNFSSYGSTGADCVASQIDFWVTRLGISQ 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3544928 3548603 + Bma018899.1 Bma04g00431 80800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00431 509 ProSitePatterns Fumarate lyases signature. 349 358 IPR020557 GO:0003824
Bma04g00431 509 Pfam Argininosuccinate lyase C-terminal 425 480 IPR029419 -
Bma04g00431 509 CDD Argininosuccinate_lyase 96 505 IPR009049 GO:0004056|GO:0042450
Bma04g00431 509 Gene3D - 74 180 IPR024083 -
Bma04g00431 509 Gene3D Fumarase/aspartase (Central domain) 181 436 - -
Bma04g00431 509 PRINTS Argininosuccinate lyase family signature 216 236 - -
Bma04g00431 509 PRINTS Argininosuccinate lyase family signature 267 283 - -
Bma04g00431 509 PRINTS Argininosuccinate lyase family signature 384 403 - -
Bma04g00431 509 PRINTS Argininosuccinate lyase family signature 175 197 - -
Bma04g00431 509 PRINTS Argininosuccinate lyase family signature 305 329 - -
Bma04g00431 509 PRINTS Argininosuccinate lyase family signature 349 365 - -
Bma04g00431 509 PANTHER ARGININOSUCCINATE LYASE 426 508 - -
Bma04g00431 509 TIGRFAM argH: argininosuccinate lyase 77 426 IPR009049 GO:0004056|GO:0042450
Bma04g00431 509 Pfam Lyase 80 374 IPR022761 -
Bma04g00431 509 Hamap Argininosuccinate lyase [argH]. 76 503 IPR009049 GO:0004056|GO:0042450
Bma04g00431 509 PANTHER ARGININOSUCCINATE LYASE 87 425 - -
Bma04g00431 509 PRINTS Fumarate lyase superfamily signature 176 194 IPR000362 -
Bma04g00431 509 PRINTS Fumarate lyase superfamily signature 305 332 IPR000362 -
Bma04g00431 509 PRINTS Fumarate lyase superfamily signature 349 365 IPR000362 -
Bma04g00431 509 PRINTS Fumarate lyase superfamily signature 221 239 IPR000362 -
Bma04g00431 509 PANTHER ARGININOSUCCINATE LYASE 426 508 IPR009049 GO:0004056|GO:0042450
Bma04g00431 509 SUPERFAMILY L-aspartase-like 77 505 IPR008948 GO:0003824
Bma04g00431 509 PANTHER ARGININOSUCCINATE LYASE 87 425 IPR009049 GO:0004056|GO:0042450
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00431 K01755 argH, ASL; argininosuccinate lyase [EC:4.3.2.1] - jre:109003912 766.533
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02585 Bma04g00431 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00133 Bma-Chr7:2038545 Bma04g00431 Bma-Chr4:3544928 0 transposed
Bma15g00989 Bma-Chr15:38409159 Bma04g00431 Bma-Chr4:3544928 2.79E-09 transposed
Bma01g02585 Bma-Chr1:83471085 Bma04g00431 Bma-Chr4:3544928 6.51E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002720 2 2 1 3 1 1 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00431 Bma_Chr04 FPKM 587.993225 602.75415 271.761658 262.189941 1100.233643 1243.20105 1042.068481 268.589081 281.182953 259.452148