Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g00457 | ATGGCTGACCCCTACTCAAATTTCTTTACAGGTATCTTCAGGCTCAACACGATCCACCATAACCAACCTTCTCCAAACCCTCCGCCGCACCCTGTTTTCTCCCACAACTTTTTCAACCAGAGCCACCCTTTCCACAACCAAACCCCCCCGCCTTCTCCGCCTCTCCGGCAAGCCCTTCCCCTCCTCAGCCTCACGCCACTCAACCAGCAACAACAAGAAGATCAATCTCACCATTCCTGCTTCACCACCATGGAAGTGGATCAGAAAAGCTTAAAACAGAAAGAGGAAGAAGACGATGACGTGGCTTCTGTAACTGTTGCCCTCCATATAGGGTTACCTAGCCCTAGTTCAGCTGAACTTGCTTCTGTTCTCTCTGCTTCTTCATCAGAAACCACTGATCTTAAAGATCATGGAGATGTAGATGATTTAGGGTACCCTATGAACAGATTAAACAAGGGTCAGTATTGGATCCCCACTCCTTCTCAGATCCTCATTGGTCCAACACAGTTTTCTTGCCCTGTTTGCTGTAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGCCATGGATCTCAGTATAGACGAGGACCAGAATCACTGAGAGGAACTCAACCAACGGGGATGCTAAGGCTTCCTTGCTACTGCTGCGCAACTGGTTGCAGAAACAACATAGACCATCCAAGGGCTAAGCCCCTTAAAGATTTTAGAACCCTCCAAACGCATTACAAAAGAAAGCATGGCATCAAGCCTTTCATGTGTAGAAAATGTGGGAAAGCCTTTGCAGTGAAAGGAGATTGGAGAACTCATGAGAAAAACTGTGGAAAGCTTTGGTATTGCATTTGTGGGTCTGATTTCAAGCACAAGAGGTCTCTTAAAGATCATATAAAAGCTTTTGGCAAGGAGCACGGAGCTTATGGAGTTGATGGGTTTGAAGAAGATGATGAACCTGCGTCTGAGGTTGAACAAGATAATGATGAATCTTTGCAGTAA | 999 | 45.75 | MADPYSNFFTGIFRLNTIHHNQPSPNPPPHPVFSHNFFNQSHPFHNQTPPPSPPLRQALPLLSLTPLNQQQQEDQSHHSCFTTMEVDQKSLKQKEEEDDDVASVTVALHIGLPSPSSAELASVLSASSSETTDLKDHGDVDDLGYPMNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCATGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGKEHGAYGVDGFEEDDEPASEVEQDNDESLQ | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3823478 | 3825456 | + | Bma018924.1 | Bma04g00457 | 80826 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g00457 | 332 | SUPERFAMILY | beta-beta-alpha zinc fingers | 166 | 192 | IPR036236 | - | |
Bma04g00457 | 332 | SUPERFAMILY | beta-beta-alpha zinc fingers | 236 | 274 | IPR036236 | - | |
Bma04g00457 | 332 | MobiDBLite | consensus disorder prediction | 308 | 332 | - | - | |
Bma04g00457 | 332 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 254 | 274 | IPR013087 | - | |
Bma04g00457 | 332 | Gene3D | Classic Zinc Finger | 231 | 308 | - | - | |
Bma04g00457 | 332 | PANTHER | ZINC FINGER PROTEIN WIP2 | 1 | 329 | IPR043584 | GO:0003700|GO:0010468 | |
Bma04g00457 | 332 | MobiDBLite | consensus disorder prediction | 313 | 332 | - | - | |
Bma04g00457 | 332 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 172 | 192 | IPR013087 | - | |
Bma04g00457 | 332 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 170 | 197 | IPR013087 | - | |
Bma04g00457 | 332 | Gene3D | Classic Zinc Finger | 169 | 192 | - | - | |
Bma04g00457 | 332 | PANTHER | TESTA 1 PROTEIN, PUTATIVE-RELATED | 1 | 329 | - | - | |
Bma04g00457 | 332 | SMART | c2h2final6 | 254 | 274 | IPR013087 | - | |
Bma04g00457 | 332 | SMART | c2h2final6 | 170 | 192 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g00457 | Bma-Chr4:3823478 | Bma07g00193 | Bma-Chr7:2421379 | 4.41E-77 | dispersed | |
Bma09g00850 | Bma-Chr9:47527530 | Bma04g00457 | Bma-Chr4:3823478 | 4.64E-127 | transposed | |
Bma06g00769 | Bma-Chr6:39469829 | Bma04g00457 | Bma-Chr4:3823478 | 4.88E-102 | transposed | |
Bma01g02723 | Bma-Chr1:84574183 | Bma04g00457 | Bma-Chr4:3823478 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57157 | None | None | None | None | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g00457 | - | - | jre:108986074 | 509.22 |