Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00457 ATGGCTGACCCCTACTCAAATTTCTTTACAGGTATCTTCAGGCTCAACACGATCCACCATAACCAACCTTCTCCAAACCCTCCGCCGCACCCTGTTTTCTCCCACAACTTTTTCAACCAGAGCCACCCTTTCCACAACCAAACCCCCCCGCCTTCTCCGCCTCTCCGGCAAGCCCTTCCCCTCCTCAGCCTCACGCCACTCAACCAGCAACAACAAGAAGATCAATCTCACCATTCCTGCTTCACCACCATGGAAGTGGATCAGAAAAGCTTAAAACAGAAAGAGGAAGAAGACGATGACGTGGCTTCTGTAACTGTTGCCCTCCATATAGGGTTACCTAGCCCTAGTTCAGCTGAACTTGCTTCTGTTCTCTCTGCTTCTTCATCAGAAACCACTGATCTTAAAGATCATGGAGATGTAGATGATTTAGGGTACCCTATGAACAGATTAAACAAGGGTCAGTATTGGATCCCCACTCCTTCTCAGATCCTCATTGGTCCAACACAGTTTTCTTGCCCTGTTTGCTGTAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGCCATGGATCTCAGTATAGACGAGGACCAGAATCACTGAGAGGAACTCAACCAACGGGGATGCTAAGGCTTCCTTGCTACTGCTGCGCAACTGGTTGCAGAAACAACATAGACCATCCAAGGGCTAAGCCCCTTAAAGATTTTAGAACCCTCCAAACGCATTACAAAAGAAAGCATGGCATCAAGCCTTTCATGTGTAGAAAATGTGGGAAAGCCTTTGCAGTGAAAGGAGATTGGAGAACTCATGAGAAAAACTGTGGAAAGCTTTGGTATTGCATTTGTGGGTCTGATTTCAAGCACAAGAGGTCTCTTAAAGATCATATAAAAGCTTTTGGCAAGGAGCACGGAGCTTATGGAGTTGATGGGTTTGAAGAAGATGATGAACCTGCGTCTGAGGTTGAACAAGATAATGATGAATCTTTGCAGTAA 999 45.75 MADPYSNFFTGIFRLNTIHHNQPSPNPPPHPVFSHNFFNQSHPFHNQTPPPSPPLRQALPLLSLTPLNQQQQEDQSHHSCFTTMEVDQKSLKQKEEEDDDVASVTVALHIGLPSPSSAELASVLSASSSETTDLKDHGDVDDLGYPMNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCATGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGKEHGAYGVDGFEEDDEPASEVEQDNDESLQ 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3823478 3825456 + Bma018924.1 Bma04g00457 80826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00457 332 SUPERFAMILY beta-beta-alpha zinc fingers 166 192 IPR036236 -
Bma04g00457 332 SUPERFAMILY beta-beta-alpha zinc fingers 236 274 IPR036236 -
Bma04g00457 332 MobiDBLite consensus disorder prediction 308 332 - -
Bma04g00457 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 274 IPR013087 -
Bma04g00457 332 Gene3D Classic Zinc Finger 231 308 - -
Bma04g00457 332 PANTHER ZINC FINGER PROTEIN WIP2 1 329 IPR043584 GO:0003700|GO:0010468
Bma04g00457 332 MobiDBLite consensus disorder prediction 313 332 - -
Bma04g00457 332 ProSitePatterns Zinc finger C2H2 type domain signature. 172 192 IPR013087 -
Bma04g00457 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 197 IPR013087 -
Bma04g00457 332 Gene3D Classic Zinc Finger 169 192 - -
Bma04g00457 332 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 329 - -
Bma04g00457 332 SMART c2h2final6 254 274 IPR013087 -
Bma04g00457 332 SMART c2h2final6 170 192 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00457 Bma-Chr4:3823478 Bma07g00193 Bma-Chr7:2421379 4.41E-77 dispersed
Bma09g00850 Bma-Chr9:47527530 Bma04g00457 Bma-Chr4:3823478 4.64E-127 transposed
Bma06g00769 Bma-Chr6:39469829 Bma04g00457 Bma-Chr4:3823478 4.88E-102 transposed
Bma01g02723 Bma-Chr1:84574183 Bma04g00457 Bma-Chr4:3823478 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57157 None None None None Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00457 - - jre:108986074 509.22