Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00462 ATGGAGCCAACTGCAGGATTTAACTCTGGATTCAATCCCATTGGTCATGTACCTGAAGAATCCGGACTCGAACTGCTCCAGTTTCCCGATGAGATTCATAGACTGATGTCTTTCCCTCAAGAAAATTCTAGCTCATTCACTGCACTTCTGGAACTTCCTTCGACGCAAGCCATGGACCTTCTCCATTCTCCCCACTCTGTCAGAGATCCAACGACGGGGAAACTCCCACCTCATTCTCTCCATAATTCAGTTAGGAACGGTCACAGACTTCACTTCCAACAATTTGACGACCATTTGACCTTCCCGACTGTTGAACGAGCAGCCAAGCTGCCGGCCTTCGCCGGAGAAAGTTCGATGGAAACGCCGAGGTCGCTGCCATCGAACATTTGCGCGAATTTGGAGAACGTAAAGAACGAGCTCATCATGGAGCCTGAGGAATCCGAAGCGTTATTCTCTGATCCAACGGTGGAAAACTCCAACCAGAGATCAGCCAAGAGGAAGAACCGAGAGAAGAAGGGCAAGAAATGCAAAAACGAAAGCTCTGAAGACGCAGAGAAGCTTCCGTACGTTCATGTCCGAGCTCGTCGCGGTCAAGCTACAGACAGCCATAGCTTGGCAGAGCGAGCGAGGAGAGAGAAGATAAACGCTCGAATGAAGCTCCTCCAAGATCTGGTCCCTGGTTGCAGCAAGATATCAGGCACAGCGCTAGTTCTCGATGAAATTATCAACCATGTGCAGTCCCTGCAACGTCAAGTGGAGTTCCTGTCAATGAGACTTGCCTCAGTCAATCCAACAATTGATTTCAATCTAGATACAATTTTGGGTGCAGAGAGCGAGTATACAACGGATGGTAACTTTTCAAGCATGCCCACGGATTTGATGTGGCCCGAGGTCCTTGCCGGTGGAAATAGGCAACACCGACGGCGGCAGCAACTACAAGAATGGCAACATGATGGACTTAACCAGCCTGGTTGGGAGAGAGGAGAAGAAAATCAAAATTTCATCACTCCAGAGCACTCATTTTTAACCTACGACTCCTCTGCACATTCAGCTTCTCTGCATTCAAATCAGATGAAGATGGAGCTATGA 1089 48.67 MEPTAGFNSGFNPIGHVPEESGLELLQFPDEIHRLMSFPQENSSSFTALLELPSTQAMDLLHSPHSVRDPTTGKLPPHSLHNSVRNGHRLHFQQFDDHLTFPTVERAAKLPAFAGESSMETPRSLPSNICANLENVKNELIMEPEESEALFSDPTVENSNQRSAKRKNREKKGKKCKNESSEDAEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQDLVPGCSKISGTALVLDEIINHVQSLQRQVEFLSMRLASVNPTIDFNLDTILGAESEYTTDGNFSSMPTDLMWPEVLAGGNRQHRRRQQLQEWQHDGLNQPGWERGEENQNFITPEHSFLTYDSSAHSASLHSNQMKMEL 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3861749 3867147 - Bma018929.2 Bma04g00462 80831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00462 362 Coils Coil 238 258 - -
Bma04g00462 362 Pfam Helix-loop-helix DNA-binding domain 202 249 IPR011598 GO:0046983
Bma04g00462 362 PANTHER TRANSCRIPTION FACTOR BHLH60 16 361 - -
Bma04g00462 362 Gene3D - 195 267 IPR036638 GO:0046983
Bma04g00462 362 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 361 IPR024097 GO:0006355
Bma04g00462 362 MobiDBLite consensus disorder prediction 146 187 - -
Bma04g00462 362 CDD bHLH_AtBPE_like 188 273 - -
Bma04g00462 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 248 IPR011598 GO:0046983
Bma04g00462 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 267 IPR036638 GO:0046983
Bma04g00462 362 SMART finulus 204 254 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g00462 Bma10g00270 CCT
Bma04g01514 Bma04g00462 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00462 Bma-Chr4:3861749 Bma10g00191 Bma-Chr10:1706177 5.38E-107 dispersed
Bma08g00060 Bma-Chr8:764530 Bma04g00462 Bma-Chr4:3861749 1.47E-19 dispersed
Bma04g00462 Bma-Chr4:3861749 Bma04g01514 Bma-Chr4:51170854 7.09E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57158 PF00010 HLH 1.80E-05 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00462 - - csv:101205014 395.586