Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00464 ATGGGGTTTTCAGAAGCTGTTCAACCTGACGAACAAGAAACAAAGCTTGTAGCCACTGCTTTCATGGCTTCCAATATCAAAATCAACGATCATCATACCCAGTTAGAGCAATCCCACCACCAGCTTCACTTGCAGGAAAATCATCAAATTCCTTATGGAATTTTGATGAACTCATCATCTTCGTCCTCGTCTGCCCCTGGAAATTTCATGAACAAAGACGGTGGAGCTTATGATTTAGGTGAATTAGATCAAGCACTTTTTCTTTATTTTGATGGACAAGACCCTTCCACTGTTCAAGACCAACGCCATAGCTCCGGAATGAGACCACCGACGCTGAACATTTTCCCATCTCAGCCAATGCACGTAGAGCCCTCTTCAACACAAGCAGCTACTCCCGCAGTTCCTCTCTCTTCTTCATCCAATAATGGTCCAAACAGACCATTGGAGACCAGTGCGACCATGGAATTAGGCAACCCACCCAACGACGCCACTCCCTCTGGAACTGCTGCTCAACCTTCGAAATCTATCAAGCGTGAGGGTAACCGGCGAGGTCCAACGTCCAGTTCTGAGCAGGAAGGACCCAAGACACCCGATCCTAAGACCTTAAGAAGGCTCGCCCAGAATAGAGAAGCTGCGAGGAAAAGCCGGCTTAGGAAAAAGGCCTACGTTCAGCAATTAGAGACCAGTAGAATTAAGCTTACTCAGCTAGAACAAGAGCTGCAAAGAGCGAGATCTCAGAGTATAATTTTCGGAGGAGCAAATGTGTTAGGAGATCCAGGTCTTTCAGTTGGCATCAACAACATTAGCCCAGACGCTGCCGTGTTTGATATGGAGTACGGGAGGTGGCTGGAGGAACATCACCGGATAATGTGCGAGCTCAGAGCGGCAGTGCAGGAACATTTGCCGGAAAACCAGCTCCGGTTGTATGTAGAAAACTGCATAGCACACCTGGACGAGATAATTAATCTGAAAAGCATGGTCGCTAAATCTGACGTTTTTCATATCATTTCCGGATTGTGGATGACTTTGGCTGAGCGTTGCTTTATGTGGATTGGTGGATTTAGACCCTCTGAGCTCATCAAGATCATTTTGGGTCAAATCGAGCCATTAACGGAGCAACAAATGAGGGGAGTTTGTGGGTTACAACAGTCGACTCAGGAAGGAGAAGAAGCTCTATCTCAAGGGCTTGAAGCTTTGAATAATTCACTTTCAGAAGCCATAACATCTGATTCATTGACTTCTCCTCCAAACATGGCTAACTACATGGGTCAGATGGCTCTAGCCATCAACAAGCTCTCCACCATTGAAGGCTTCGTCAGACAGGCAGATCATTTGAGAATTCAAACGATTCACCGGCTTCATCACATCTTGACGATTCGTCAAAGTGCGAGGTGTTTGCTAGCAATGGCGGAGTATTTTCATAGACTTCGAGCTCTTAGTTCGCTGTGGATGGCTCGACCTAGGCAGGACTGA 1473 46.71 MGFSEAVQPDEQETKLVATAFMASNIKINDHHTQLEQSHHQLHLQENHQIPYGILMNSSSSSSSAPGNFMNKDGGAYDLGELDQALFLYFDGQDPSTVQDQRHSSGMRPPTLNIFPSQPMHVEPSSTQAATPAVPLSSSSNNGPNRPLETSATMELGNPPNDATPSGTAAQPSKSIKREGNRRGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLTQLEQELQRARSQSIIFGGANVLGDPGLSVGINNISPDAAVFDMEYGRWLEEHHRIMCELRAAVQEHLPENQLRLYVENCIAHLDEIINLKSMVAKSDVFHIISGLWMTLAERCFMWIGGFRPSELIKIILGQIEPLTEQQMRGVCGLQQSTQEGEEALSQGLEALNNSLSEAITSDSLTSPPNMANYMGQMALAINKLSTIEGFVRQADHLRIQTIHRLHHILTIRQSARCLLAMAEYFHRLRALSSLWMARPRQD 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3905809 3911513 - Bma018931.1 Bma04g00464 80833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00464 490 Pfam Seed dormancy control 290 363 IPR025422 GO:0006351|GO:0043565
Bma04g00464 490 ProSiteProfiles DOG1 domain profile. 272 486 IPR025422 GO:0006351|GO:0043565
Bma04g00464 490 MobiDBLite consensus disorder prediction 94 175 - -
Bma04g00464 490 Pfam bZIP transcription factor 200 240 IPR004827 GO:0003700|GO:0006355
Bma04g00464 490 PANTHER TRANSCRIPTION FACTOR TGA9 82 489 - -
Bma04g00464 490 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 82 489 - -
Bma04g00464 490 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 203 218 IPR004827 GO:0003700|GO:0006355
Bma04g00464 490 MobiDBLite consensus disorder prediction 94 203 - -
Bma04g00464 490 SMART brlzneu 196 249 IPR004827 GO:0003700|GO:0006355
Bma04g00464 490 Coils Coil 219 246 - -
Bma04g00464 490 Gene3D - 199 248 - -
Bma04g00464 490 CDD bZIP_HBP1b-like 200 252 - -
Bma04g00464 490 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 198 242 IPR004827 GO:0003700|GO:0006355
Bma04g00464 490 SUPERFAMILY Leucine zipper domain 201 243 IPR046347 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02625 Bma04g00464 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00464 Bma-Chr4:3905809 Bma10g00236 Bma-Chr10:2162224 6.04E-127 dispersed
Bma04g00464 Bma-Chr4:3905809 Bma04g01507 Bma-Chr4:51100526 2.15E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57159 PF14144 DOG1 1.90E-28 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00464 K14431 - pvy:116117562 682.945