Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00474 ATGTTTTCGTGGCTAGGAAGGATAGTTTCGGCGTGTTGGAAACCGGTAAGAAAGTATGCCCGTATGAGCAAGGATGATTTTGAGGATTCCTCTTTGGAAGATTCTCTCTTATGGTGCAGAGACTTAGATAAGCATTTCCATGGCGAACTCTCATTCGCTGTTGTTCAAGCTAATGAAATTATCGAAGATCATAGCCAGGTTGAGATAGGTAGAGAAGCCATTTTCGTTGGTGTGTACGATGGCCATGGCGGCCCAGACGCCTCTCGGTATATTCGTGACCACCTTTTCCTCCATTTCATGAGACTTGCTCAAGAGAAAAATGGAACCATCTCTGAAGATGTCCTTAGAAATGCCTTCGCTGCAACTGAAGATGGATTTCTTACTCTAGTACGTAGATCATGGGGGATAAAACCATTAATTGCAGCCATTGGATCTTGCTGTCTAGCTGGAGTTATCTGGAGGGGAACTTTATATACTGCTAATCTTGGTGACTCAAGAGCTGTGATCGGTTGTTTAGGAAAGTCAAATAAGATTATTGCTGAGCAATTGACTAGAGATCATAATGCAAGTGTGGAAGAGATTAGACAGGAACTCAGGTCGTTGCATTCTGATGATTCGCATATTGTTGTTATGAAGCATGGAGTGTGGCGAATTAAAGGCATCATTCAGGTGCTTTTTTCCCTTTATAATAGCCTGTGGTTTTTCTATGTTTGTTTTTTTTTTTTTAATGCTGATGGTGTATCATACACTTCTAAGTTCAGCATACATTTTATCTTTCCTACCAAAATTTTCTGGTGTCTTATTTGTGTTTCAAATCTTGCTTTGGCTAATTTATCTGTGTTCACATTCATGCATGTGGATCAGGTGTCCAGATCCATAGGCGACGCCTACTTGAAGAGACCTGAATTCTCTCTCGAGCCTTCCTTTCCTCGATTCCACCTCCAAGAACCTCTCCGCCGCCCCGTCCTAACCGCCGACCCATCCTTAAACACAAGACTTCTGCGACAAAATGACAAGTTTATAATATTTGCATCGGATGGGCTATGGGAGCACTTGACTAACCAGGAGGCTGTCAATATTGTCTATAATAATCCACGAGCAGGAATTGCGAAAAGGCTTGTGAAAAGGGCTCTGAATGAAGCTGCTAGGAAGAGAGAGATGAGATACGATGATCTGAAGAAGGTTGAAAAGGGAATAAGGAGATTCTTCCACGATGACATCACCGTGGTTGTCATCTTTCTAGACCACGACTCGCCGGAGAAGACGTTGTCGCCGGAGTTGTCAATAAAAGGATTCGTTGACGTTGTCGGACCATCAAATTTCAACATTCTTCAGGGGATTGCTGATAATGAAACGTCTTGA 1362 42.66 MFSWLGRIVSACWKPVRKYARMSKDDFEDSSLEDSLLWCRDLDKHFHGELSFAVVQANEIIEDHSQVEIGREAIFVGVYDGHGGPDASRYIRDHLFLHFMRLAQEKNGTISEDVLRNAFAATEDGFLTLVRRSWGIKPLIAAIGSCCLAGVIWRGTLYTANLGDSRAVIGCLGKSNKIIAEQLTRDHNASVEEIRQELRSLHSDDSHIVVMKHGVWRIKGIIQVLFSLYNSLWFFYVCFFFFNADGVSYTSKFSIHFIFPTKIFWCLICVSNLALANLSVFTFMHVDQVSRSIGDAYLKRPEFSLEPSFPRFHLQEPLRRPVLTADPSLNTRLLRQNDKFIIFASDGLWEHLTNQEAVNIVYNNPRAGIAKRLVKRALNEAARKREMRYDDLKKVEKGIRRFFHDDITVVVIFLDHDSPEKTLSPELSIKGFVDVVGPSNFNILQGIADNETS 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3985294 3987937 + Bma018940.2 Bma04g00474 80843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00474 453 Pfam Protein phosphatase 2C 73 382 IPR001932 -
Bma04g00474 453 Gene3D - 40 422 IPR036457 -
Bma04g00474 453 PANTHER ALPHABET, ISOFORM E-RELATED 7 225 - -
Bma04g00474 453 PANTHER ALPHABET, ISOFORM E-RELATED 285 433 - -
Bma04g00474 453 ProSiteProfiles PPM-type phosphatase domain profile. 49 414 IPR001932 -
Bma04g00474 453 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 7 225 - -
Bma04g00474 453 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 285 433 - -
Bma04g00474 453 ProSitePatterns PPM-type phosphatase domain signature. 75 83 IPR000222 GO:0043169
Bma04g00474 453 SUPERFAMILY PP2C-like 56 415 IPR036457 -
Bma04g00474 453 CDD PP2Cc 56 414 IPR001932 -
Bma04g00474 453 SMART PP2C_4 41 412 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00474 Bma-Chr4:3985294 Bma05g00995 Bma-Chr5:48448068 1.45E-124 dispersed
Bma04g00474 Bma-Chr4:3985294 Bma03g00616 Bma-Chr3:5088697 9.38E-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00474 K01102 - jre:109011952 544.273