Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00502 ATGTCTGCGCGCTTTTTCTCAGTCAATGCTCCGGTTACTCGGGCTTTTCTTACTTTCTCTGCGATCTTCACCGTTCTCTTCGAGATCCAAGGACGTTCTAGTAAGCTAGGTTTGTCCTATCAGGATATCTTTGGAAAGTTCCGTCTTTGGAAGTTAATTATGTCAGTTTTTTCCTTTTCGTCCACTCCTGAACTTTTGTTTGGACTGTATTTGCTATACTACTTCAGAGTTTTTGAGCGGCAAATAGGTTCAAATAAGTACTCTGTGTTTGTTTTCTTCTCTATAATAGCCTCATTACTCTTCGAGGTTCTTTCTCTAGCACTCCTTAAAGAGTCTGTAGCAAATGTAGTCACATCTGGACCATATGGTCTTATATTTTCTTCTTTTGTACCCTTTTTCTTTGACATTCCTGTTTCCACACGGTTTAATGTATACGGTGTGCGATTCTCTGACAAGGTTTTCATATATATGGCTGGTATCCAGCAGCTTCTCTTGTCATCTTGGAGTAGATCCATCTTACCTGGTTTATGTGGCATTCTTGCTGGTTCTTTGTATCGCTTGAATGTCTTAGGCATCAGAAAGGCAAAGATTCCAGATGGTATTCTTTCCTACTTTTCACGATTTTCTTGGCTTTATGTTGGGGGTCCACCTTCGGCACCATCAAGAAATATTGTAGGAAACATACCACCCTTTCCTGCGCACCAAGCAGAGGCAAGTGCTAATAGGAACTCCCCTCCCCCAGTGGCTGCTGTAGAGCAGACAGAGGACACCGTTTCTACACTTGTATCCATGGGATTTGACAGAGATTCAGCCAGGCAAGCTCTTGTGCATGCTCGAAACGACATCAATACGGCGACCAACATTCTTCTGGAGGCACAATCCCATTAG 888 42.91 MSARFFSVNAPVTRAFLTFSAIFTVLFEIQGRSSKLGLSYQDIFGKFRLWKLIMSVFSFSSTPELLFGLYLLYYFRVFERQIGSNKYSVFVFFSIIASLLFEVLSLALLKESVANVVTSGPYGLIFSSFVPFFFDIPVSTRFNVYGVRFSDKVFIYMAGIQQLLLSSWSRSILPGLCGILAGSLYRLNVLGIRKAKIPDGILSYFSRFSWLYVGGPPSAPSRNIVGNIPPFPAHQAEASANRNSPPPVAAVEQTEDTVSTLVSMGFDRDSARQALVHARNDINTATNILLEAQSH 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4406594 4411006 + Bma018971.1 Bma04g00502 80871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00502 295 Gene3D - 8 188 IPR035952 -
Bma04g00502 295 Pfam Rhomboid family 47 189 IPR022764 GO:0004252|GO:0016021
Bma04g00502 295 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 252 292 IPR015940 -
Bma04g00502 295 SMART uba_6 254 291 IPR015940 -
Bma04g00502 295 SUPERFAMILY Rhomboid-like 10 186 IPR035952 -
Bma04g00502 295 Pfam UBA/TS-N domain 255 289 IPR015940 -
Bma04g00502 295 SUPERFAMILY UBA-like 241 292 IPR009060 GO:0005515
Bma04g00502 295 Gene3D - 232 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00502 K25216 UBAC2; ubiquitin-associated domain-containing protein 2 - zju:107403965 416.001
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02037 Bma-Chr1:75156090 Bma04g00502 Bma-Chr4:4406594 5.45E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1099 . . . Bda03g00633 . . . . . . . Cma07g00885 Car03g01074 Car07g00874 Sed14g0032 . . Bhi03g02494 Tan03g0497 Cmetu08g0067 . Hepe04g0503 . . Cla04g00576 . . Cco04g0720 . . Cre04g0653 . . . . Lsi01g01277 Csa06g02632 Chy08g00890 . . . . . Bpe04g00596 . . Bma04g00502 . . Cmo07g00917 . . . . . Cpe19g00440 . . . . . . . . . . . . . . . . . Cme08g01406
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004709 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 2 1 0 1 1 1 2 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00502 Bma_Chr04 FPKM 4.242038 3.280707 2.886142 2.505901 6.356405 7.278146 5.348865 10.86302 9.984486 10.187329