Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g00504 | ATGCAGTCCGATAACTCGGAGCTCTACAGATTGCTCGCCGGAAATGGTTTCTTTGACGTCGGACGGAAAAGCTTATGCAGTTCTTCCTCGTACTACCCTCTCGATCAAATTTCTGGAACGCCAGACACGCTTCCATCTGCACACGAAAGAGCTCTCGTTGCTCTCAGGAATCATAAGGAGGCTGAGAAGAGGAGGAGAGAGAGAATTAATTCGCATCTCAACAAGCTTCGGAATCTTCTTTCCTGTAATTCCAAAACAGACAAAGCTTCTCTTCTTGCAAAAGTTGTTCAACGCGTGAAAGAACTAAAGCAACAAGCTTCTGAAATCTCTGGAATCGAGACTTTCCCTTCAGAAACCGACGAAATCTCTGTGCTATCCGGCGATTTGTCTGGCGACGGGAGATCCATTTTCAAAGCCTCTTTGTGCTGCGAAGATCGCTCCGACCTGATACCAGACCTCATCGATATCCTCCACTCTCTCCACTTGAAGACTCTAACAGCTGAAATGGCGACCCTCGGAGGAAGGACCAAGAACATTCTCGTTGTTGCCCCCGAAAAAGATTCCAGCGTCGAATCGGTGCATTTCCTTCAAAACGCATTGAAATCTCTGCTTGAAAGTTCCAATCCCAGCGAAAGATCGAAGAGAAGACGGGTTTCAGATCGCCATGACCGACCATAA | 678 | 47.35 | MQSDNSELYRLLAGNGFFDVGRKSLCSSSSYYPLDQISGTPDTLPSAHERALVALRNHKEAEKRRRERINSHLNKLRNLLSCNSKTDKASLLAKVVQRVKELKQQASEISGIETFPSETDEISVLSGDLSGDGRSIFKASLCCEDRSDLIPDLIDILHSLHLKTLTAEMATLGGRTKNILVVAPEKDSSVESVHFLQNALKSLLESSNPSERSKRRRVSDRHDRP | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4436374 | 4437573 | - | Bma018974.1 | Bma04g00504 | 80873 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g00504 | 225 | Coils | Coil | 59 | 79 | - | - | |
Bma04g00504 | 225 | Pfam | Helix-loop-helix DNA-binding domain | 57 | 102 | IPR011598 | GO:0046983 | |
Bma04g00504 | 225 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 53 | 102 | IPR011598 | GO:0046983 | |
Bma04g00504 | 225 | CDD | bHLH_AtAIG1_like | 49 | 124 | - | - | |
Bma04g00504 | 225 | PANTHER | TRANSCRIPTION FACTOR BHLH30 | 4 | 221 | IPR045847 | GO:0003700|GO:0006355 | |
Bma04g00504 | 225 | Gene3D | - | 49 | 111 | IPR036638 | GO:0046983 | |
Bma04g00504 | 225 | PANTHER | TRANSCRIPTION FACTOR BHLH106-RELATED | 4 | 221 | - | - | |
Bma04g00504 | 225 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 57 | 111 | IPR036638 | GO:0046983 | |
Bma04g00504 | 225 | SMART | finulus | 59 | 108 | IPR011598 | GO:0046983 | |
Bma04g00504 | 225 | MobiDBLite | consensus disorder prediction | 205 | 225 | - | - | |
Bma04g00504 | 225 | MobiDBLite | consensus disorder prediction | 208 | 225 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g02706 | Bma-Chr1:84459351 | Bma04g00504 | Bma-Chr4:4436374 | 5.11E-53 | dispersed | |
Bma04g00504 | Bma-Chr4:4436374 | Bma05g00041 | Bma-Chr5:2179225 | 6.48E-07 | dispersed | |
Bma15g00097 | Bma-Chr15:1059794 | Bma04g00504 | Bma-Chr4:4436374 | 7.22E-53 | transposed | |
Bma01g02036 | Bma-Chr1:75137718 | Bma04g00504 | Bma-Chr4:4436374 | 1.34E-134 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57165 | PF00010 | HLH | 4.50E-09 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g00504 | - | K22484 | qsu:111998080 | 309.686 |