Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00504 ATGCAGTCCGATAACTCGGAGCTCTACAGATTGCTCGCCGGAAATGGTTTCTTTGACGTCGGACGGAAAAGCTTATGCAGTTCTTCCTCGTACTACCCTCTCGATCAAATTTCTGGAACGCCAGACACGCTTCCATCTGCACACGAAAGAGCTCTCGTTGCTCTCAGGAATCATAAGGAGGCTGAGAAGAGGAGGAGAGAGAGAATTAATTCGCATCTCAACAAGCTTCGGAATCTTCTTTCCTGTAATTCCAAAACAGACAAAGCTTCTCTTCTTGCAAAAGTTGTTCAACGCGTGAAAGAACTAAAGCAACAAGCTTCTGAAATCTCTGGAATCGAGACTTTCCCTTCAGAAACCGACGAAATCTCTGTGCTATCCGGCGATTTGTCTGGCGACGGGAGATCCATTTTCAAAGCCTCTTTGTGCTGCGAAGATCGCTCCGACCTGATACCAGACCTCATCGATATCCTCCACTCTCTCCACTTGAAGACTCTAACAGCTGAAATGGCGACCCTCGGAGGAAGGACCAAGAACATTCTCGTTGTTGCCCCCGAAAAAGATTCCAGCGTCGAATCGGTGCATTTCCTTCAAAACGCATTGAAATCTCTGCTTGAAAGTTCCAATCCCAGCGAAAGATCGAAGAGAAGACGGGTTTCAGATCGCCATGACCGACCATAA 678 47.35 MQSDNSELYRLLAGNGFFDVGRKSLCSSSSYYPLDQISGTPDTLPSAHERALVALRNHKEAEKRRRERINSHLNKLRNLLSCNSKTDKASLLAKVVQRVKELKQQASEISGIETFPSETDEISVLSGDLSGDGRSIFKASLCCEDRSDLIPDLIDILHSLHLKTLTAEMATLGGRTKNILVVAPEKDSSVESVHFLQNALKSLLESSNPSERSKRRRVSDRHDRP 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4436374 4437573 - Bma018974.1 Bma04g00504 80873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00504 225 Coils Coil 59 79 - -
Bma04g00504 225 Pfam Helix-loop-helix DNA-binding domain 57 102 IPR011598 GO:0046983
Bma04g00504 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Bma04g00504 225 CDD bHLH_AtAIG1_like 49 124 - -
Bma04g00504 225 PANTHER TRANSCRIPTION FACTOR BHLH30 4 221 IPR045847 GO:0003700|GO:0006355
Bma04g00504 225 Gene3D - 49 111 IPR036638 GO:0046983
Bma04g00504 225 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 4 221 - -
Bma04g00504 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 111 IPR036638 GO:0046983
Bma04g00504 225 SMART finulus 59 108 IPR011598 GO:0046983
Bma04g00504 225 MobiDBLite consensus disorder prediction 205 225 - -
Bma04g00504 225 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02706 Bma-Chr1:84459351 Bma04g00504 Bma-Chr4:4436374 5.11E-53 dispersed
Bma04g00504 Bma-Chr4:4436374 Bma05g00041 Bma-Chr5:2179225 6.48E-07 dispersed
Bma15g00097 Bma-Chr15:1059794 Bma04g00504 Bma-Chr4:4436374 7.22E-53 transposed
Bma01g02036 Bma-Chr1:75137718 Bma04g00504 Bma-Chr4:4436374 1.34E-134 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57165 PF00010 HLH 4.50E-09 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00504 - K22484 qsu:111998080 309.686