Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g00526 | ATGAACGACTTGCTTTCTTCCACCTCCTTCCCTCGGGAAGAGCACGTCATCGAGATGACGGACCCGGCGGCGTCTTCTCCCGGTGTACAACTCGGCAAATTCTTCAAAGACGTCGAGGCCATTAAAGAAGATCTTAGAGAGCTGGAGTGCCGCCGCGTAAATCTGCAGAGCTCTCACGAGAAGAGCAAAACTCTCCACAACGCTAAGGCGGTGAAAGAGCTGAGGTCGAACATGGACGCTGACATCTCGCTGGCTCTGAGTAAGGCGAAGCTAATCAAGGCCCAGCTCGAGGCTCTCGACCGGTCCAACGCCGCGAATCGAAGCTTTCCCGGGTGCGGCCCGGGATCGTCGTCGGACCGAACGCGGACCTCCGTTGTGAACGGGCTGAGAAAGAATTTGAAGGATTCGATGGATAACTTCAGCGCTCTGAGGCAGAAGATCTCGTCGGAGTACAGAGAGACTGTACAGCGGAGATATTTCACCGTCACCGGCGAAAATCCCGATGAGAAAACTGTTGATCTTTTGATCTCCTCAGGAGAAAGCGAGACGTTCTTACAGAAAGCGATACAACAGCAAGGGAGAGGGAGGATTCTGGACACCATAAACGAGATTCAAGAGAGGCAAGACGCAGTGAAAGAGCTGGAGAAGAATCTGAAGGAGCTACACCAGGTGTTCATGGACATGGCCGTTCTGGTTCAAGCTCAGGGGGAACAACTCGACGACATCGAGAGCCATGTGGCTCGTGCTCATTCCATCGTCAGAGACGGCACCAACCAGTTACAGACGGCGAGGGTCCACCAGAAGAGCACCAGAAAATGGACTGTTATAGCCATTATTATTTTGCTTATAATCATCTTGATCATCGTTCTCAGCCTTCAGCCATGGAAGTAG | 891 | 52.41 | MNDLLSSTSFPREEHVIEMTDPAASSPGVQLGKFFKDVEAIKEDLRELECRRVNLQSSHEKSKTLHNAKAVKELRSNMDADISLALSKAKLIKAQLEALDRSNAANRSFPGCGPGSSSDRTRTSVVNGLRKNLKDSMDNFSALRQKISSEYRETVQRRYFTVTGENPDEKTVDLLISSGESETFLQKAIQQQGRGRILDTINEIQERQDAVKELEKNLKELHQVFMDMAVLVQAQGEQLDDIESHVARAHSIVRDGTNQLQTARVHQKSTRKWTVIAIIILLIIILIIVLSLQPWK | 296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4618116 | 4619099 | - | Bma018999.1 | Bma04g00526 | 80895 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g00526 | 296 | SUPERFAMILY | t-snare proteins | 30 | 256 | IPR010989 | GO:0016020|GO:0016192 | |
Bma04g00526 | 296 | SMART | tSNARE_6 | 196 | 263 | IPR000727 | - | |
Bma04g00526 | 296 | Pfam | Syntaxin | 33 | 236 | IPR006011 | GO:0016020 | |
Bma04g00526 | 296 | Coils | Coil | 197 | 224 | - | - | |
Bma04g00526 | 296 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 201 | 263 | IPR000727 | - | |
Bma04g00526 | 296 | ProSitePatterns | Syntaxin / epimorphin family signature. | 207 | 246 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Bma04g00526 | 296 | Gene3D | - | 30 | 161 | - | - | |
Bma04g00526 | 296 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 9 | 291 | - | - | |
Bma04g00526 | 296 | SMART | SynN_4 | 26 | 152 | IPR006011 | GO:0016020 | |
Bma04g00526 | 296 | Gene3D | - | 197 | 293 | - | - | |
Bma04g00526 | 296 | Pfam | SNARE domain | 237 | 289 | IPR000727 | - | |
Bma04g00526 | 296 | CDD | SNARE_syntaxin1-like | 200 | 262 | - | - | |
Bma04g00526 | 296 | CDD | SynN | 31 | 188 | IPR006011 | GO:0016020 | |
Bma04g00526 | 296 | Coils | Coil | 38 | 58 | - | - | |
Bma04g00526 | 296 | PANTHER | SYNTAXIN | 9 | 291 | IPR045242 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g00526 | Bma-Chr4:4618116 | Bma07g00353 | Bma-Chr7:4463222 | 5.98E-127 | dispersed | |
Bma01g02014 | Bma-Chr1:74718270 | Bma04g00526 | Bma-Chr4:4618116 | 4.38E-113 | wgd | |
Bma10g00132 | Bma-Chr10:1190775 | Bma04g00526 | Bma-Chr4:4618116 | 1.11E-151 | wgd | |
Bma04g00526 | Bma-Chr4:4618116 | Bma04g01535 | Bma-Chr4:51364686 | 5.35E-133 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g00526 | K08486 | - | csv:101208931 | 438.343 |