Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00526 ATGAACGACTTGCTTTCTTCCACCTCCTTCCCTCGGGAAGAGCACGTCATCGAGATGACGGACCCGGCGGCGTCTTCTCCCGGTGTACAACTCGGCAAATTCTTCAAAGACGTCGAGGCCATTAAAGAAGATCTTAGAGAGCTGGAGTGCCGCCGCGTAAATCTGCAGAGCTCTCACGAGAAGAGCAAAACTCTCCACAACGCTAAGGCGGTGAAAGAGCTGAGGTCGAACATGGACGCTGACATCTCGCTGGCTCTGAGTAAGGCGAAGCTAATCAAGGCCCAGCTCGAGGCTCTCGACCGGTCCAACGCCGCGAATCGAAGCTTTCCCGGGTGCGGCCCGGGATCGTCGTCGGACCGAACGCGGACCTCCGTTGTGAACGGGCTGAGAAAGAATTTGAAGGATTCGATGGATAACTTCAGCGCTCTGAGGCAGAAGATCTCGTCGGAGTACAGAGAGACTGTACAGCGGAGATATTTCACCGTCACCGGCGAAAATCCCGATGAGAAAACTGTTGATCTTTTGATCTCCTCAGGAGAAAGCGAGACGTTCTTACAGAAAGCGATACAACAGCAAGGGAGAGGGAGGATTCTGGACACCATAAACGAGATTCAAGAGAGGCAAGACGCAGTGAAAGAGCTGGAGAAGAATCTGAAGGAGCTACACCAGGTGTTCATGGACATGGCCGTTCTGGTTCAAGCTCAGGGGGAACAACTCGACGACATCGAGAGCCATGTGGCTCGTGCTCATTCCATCGTCAGAGACGGCACCAACCAGTTACAGACGGCGAGGGTCCACCAGAAGAGCACCAGAAAATGGACTGTTATAGCCATTATTATTTTGCTTATAATCATCTTGATCATCGTTCTCAGCCTTCAGCCATGGAAGTAG 891 52.41 MNDLLSSTSFPREEHVIEMTDPAASSPGVQLGKFFKDVEAIKEDLRELECRRVNLQSSHEKSKTLHNAKAVKELRSNMDADISLALSKAKLIKAQLEALDRSNAANRSFPGCGPGSSSDRTRTSVVNGLRKNLKDSMDNFSALRQKISSEYRETVQRRYFTVTGENPDEKTVDLLISSGESETFLQKAIQQQGRGRILDTINEIQERQDAVKELEKNLKELHQVFMDMAVLVQAQGEQLDDIESHVARAHSIVRDGTNQLQTARVHQKSTRKWTVIAIIILLIIILIIVLSLQPWK 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4618116 4619099 - Bma018999.1 Bma04g00526 80895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00526 296 SUPERFAMILY t-snare proteins 30 256 IPR010989 GO:0016020|GO:0016192
Bma04g00526 296 SMART tSNARE_6 196 263 IPR000727 -
Bma04g00526 296 Pfam Syntaxin 33 236 IPR006011 GO:0016020
Bma04g00526 296 Coils Coil 197 224 - -
Bma04g00526 296 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 201 263 IPR000727 -
Bma04g00526 296 ProSitePatterns Syntaxin / epimorphin family signature. 207 246 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bma04g00526 296 Gene3D - 30 161 - -
Bma04g00526 296 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 291 - -
Bma04g00526 296 SMART SynN_4 26 152 IPR006011 GO:0016020
Bma04g00526 296 Gene3D - 197 293 - -
Bma04g00526 296 Pfam SNARE domain 237 289 IPR000727 -
Bma04g00526 296 CDD SNARE_syntaxin1-like 200 262 - -
Bma04g00526 296 CDD SynN 31 188 IPR006011 GO:0016020
Bma04g00526 296 Coils Coil 38 58 - -
Bma04g00526 296 PANTHER SYNTAXIN 9 291 IPR045242 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00526 Bma-Chr4:4618116 Bma07g00353 Bma-Chr7:4463222 5.98E-127 dispersed
Bma01g02014 Bma-Chr1:74718270 Bma04g00526 Bma-Chr4:4618116 4.38E-113 wgd
Bma10g00132 Bma-Chr10:1190775 Bma04g00526 Bma-Chr4:4618116 1.11E-151 wgd
Bma04g00526 Bma-Chr4:4618116 Bma04g01535 Bma-Chr4:51364686 5.35E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00526 K08486 - csv:101208931 438.343