Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00527 ATGGCGACGTACTTCCAGGGAAACTCCGATTTCCAACCACCTGACGGCTTACAAACTCTAGTCCTGATGAATCCTGCCTACTCGCAGTACTCCGACACACCCTCTCCGGCCCCCGGCAACTTCGTTTTCCTCAACACTCAGGTTGGAAATCCCCTCTATCCCCTCAATCTTCCTCATGCGCCGCAATCTCTCTCTCAGCACTTGGTCGGCGTCCCGCTTTCTGCCGCCACCTCGCCGGCTACCTCTCAAGACCCGAACTGTCTATCCATGCACACCCACCACGATGTTTCTGCCTTGCATGGCTACATCCCGCGAACACAAAGTAGCTTTTGGAGCTCAATTGATCAAACCTCATCGGTGGCGCGTGAAGCCACACGCTCCAAGGAAGGACTGTCTCTCACCCTCTCTTCTCATCCACCAGGGTATGGATTTGTCCAAATTCCATCCCGAACTCAACGAGAAGTATCTGGCGAGGATGTACGTATTTCAGGAGGATCATCTTCCTCAGCTTCCGGCGTTACTAACAGCATTCCAGCAATTCGAGGCATGTTGCATAGCTCGAAGTACTTGAGAGCAGCTCAGGAGCTTCTCGATGAAGTAGCAAACGTCCGCAATAATGGATTTAAGAAAGAGACCCTGAAGAAGGCTGAGAGTCATCGGACCAAGCTGGAGGAGTCACTGGCGGCTGCCGGAGATAATTCAGTCAGAGTGGAAGAGGAAGGGAAGCCGGGTTCTGAGCTTTCTGCTGCAGAGAGGCAAGAAATCCAGATGAAGAAGGCCAAGCTTATTAACATGCTTGACGAGGTGGAGCAAAGATACAGACAATACCACCATCAAATGCAGATCCTCATTTCCTCTTTCGAACAAGCGGCAGGAATAGGCTCTGCAAGAACATACACAGCCTTGGCGCTTCAGACAATCTCTAAGCAATTCAGGTGTTTAAAAGACGCAATCACTGCGCAAATTCGAGTGGCAAACAAAAACCTAGGCGAAGAAGACGGCCATGGAAAACTTGAAGGTTCAAGACTTAGATTTGTAGACCACCATCTTAATCAACAGCGGGCTCTTCAGAGCTTGGGAATGATCCAACACAATGCCTGGAGACCCCAGAGAGGATTGCCTGAGAGATCAGTTTCTGTTCTTCGAGCATGGCTATTCGAACACTTTCTTCACCCGTATCCAAAAGATTCAGACAAACACATGCTGGCAAAACAGACAGGACTGACGAGAAGCCAGGTCTCGAATTGGTTCATTAATGCTCGAGTTCGTCTATGGAAGCCAATGGTAGAAGAAATGTACACGGAGGAAATAAAGGAGCAAGAACAGACCTTATCAGCAGAAAAAAGCAGCAAAAGCAACGGCGATACAACATCCAAATCCACAACACCTTCACCGAAAGAAAAGAGTCCTCAGACGAAAAATCAACTTTCAGGTCTCAATTCGAAACAGGGCGATTCTTTGCATCACCATGCTCCCCCTGCACTTCCTTTTTCTTCCACTGTAACATCAGTTGAAGCCGAAAATGTTCGAAGCCAATCCGGGTTTTGGCTCATTGGGTCTTCAGAACTTGATGGAATCACACAAGGAAGTCCAAAGAGGCAACGGATTGCGGAAACGACACAGTCCCCAAACAGTATGCCTATAAACATTGATATGAAACCAGGGGAAGCCAGTAATGAGCAAGTTTTTATGAAGTTTAACAATGGCAGGCACAGCAGAGATGGCTATTCTTTCATTGGAGGTCAAGCTAATTTCATCGGAGGTTTTGGGCAATACCCAATTGCAGATATTGACAGGTTCGATGCAGAGCCATTCCCGACGGGATTTTCCGGCAATGGTGTTTCTCTCACCCTCGGACTTCACCACTCAGAAAATCTCTCTGTGTCAGTGGCGAATCAAAGTTTCCTTCCGAACCAGACAATGAATTTTGGGAGACGAGTTGACATCGGCGAACCAAATGGTTTCGATGCAATTAACATATCAACACCGCACTCCACATCTGCATTTGACGGCATCGATATACAGAACCGGAAAAGATTTGTGGCGCAATTGTTGCCGGACTTTGTGGCCTGA 2073 48.09 MATYFQGNSDFQPPDGLQTLVLMNPAYSQYSDTPSPAPGNFVFLNTQVGNPLYPLNLPHAPQSLSQHLVGVPLSAATSPATSQDPNCLSMHTHHDVSALHGYIPRTQSSFWSSIDQTSSVAREATRSKEGLSLTLSSHPPGYGFVQIPSRTQREVSGEDVRISGGSSSSASGVTNSIPAIRGMLHSSKYLRAAQELLDEVANVRNNGFKKETLKKAESHRTKLEESLAAAGDNSVRVEEEGKPGSELSAAERQEIQMKKAKLINMLDEVEQRYRQYHHQMQILISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITAQIRVANKNLGEEDGHGKLEGSRLRFVDHHLNQQRALQSLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYTEEIKEQEQTLSAEKSSKSNGDTTSKSTTPSPKEKSPQTKNQLSGLNSKQGDSLHHHAPPALPFSSTVTSVEAENVRSQSGFWLIGSSELDGITQGSPKRQRIAETTQSPNSMPINIDMKPGEASNEQVFMKFNNGRHSRDGYSFIGGQANFIGGFGQYPIADIDRFDAEPFPTGFSGNGVSLTLGLHHSENLSVSVANQSFLPNQTMNFGRRVDIGEPNGFDAINISTPHSTSAFDGIDIQNRKRFVAQLLPDFVA 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4641565 4643938 - Bma019001.1 Bma04g00527 80896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00527 690 SMART HOX_1 367 431 IPR001356 GO:0003677
Bma04g00527 690 SUPERFAMILY Homeodomain-like 368 434 IPR009057 -
Bma04g00527 690 MobiDBLite consensus disorder prediction 446 484 - -
Bma04g00527 690 ProSiteProfiles 'Homeobox' domain profile. 364 427 IPR001356 GO:0003677
Bma04g00527 690 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 647 - -
Bma04g00527 690 Pfam Homeobox KN domain 384 423 IPR008422 GO:0003677|GO:0006355
Bma04g00527 690 SMART prehox3 177 320 IPR006563 -
Bma04g00527 690 MobiDBLite consensus disorder prediction 235 251 - -
Bma04g00527 690 CDD homeodomain 367 428 IPR001356 GO:0003677
Bma04g00527 690 MobiDBLite consensus disorder prediction 223 251 - -
Bma04g00527 690 Pfam Associated with HOX 183 319 IPR006563 -
Bma04g00527 690 MobiDBLite consensus disorder prediction 436 497 - -
Bma04g00527 690 Gene3D - 363 441 - -
Bma04g00527 690 Coils Coil 213 233 - -
Bma04g00527 690 Coils Coil 252 279 - -
Bma04g00527 690 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 647 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01538 Bma04g00527 CCT
Bma04g00527 Bma10g00129 CCT
Bma01g02011 Bma04g00527 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02340 Bma-Chr1:81010313 Bma04g00527 Bma-Chr4:4641565 6.13E-91 dispersed
Bma04g00222 Bma-Chr4:1894730 Bma04g00527 Bma-Chr4:4641565 6.80E-84 dispersed
Bma04g00527 Bma-Chr4:4641565 Bma14g00602 Bma-Chr14:6539299 3.44E-84 dispersed
Bma04g01264 Bma-Chr4:38296452 Bma04g00527 Bma-Chr4:4641565 8.60E-67 dispersed
Bma10g00308 Bma-Chr10:2842352 Bma04g00527 Bma-Chr4:4641565 1.16E-67 dispersed
Bma01g00927 Bma-Chr1:9069693 Bma04g00527 Bma-Chr4:4641565 2.90E-48 transposed
Bma01g02011 Bma-Chr1:74608352 Bma04g00527 Bma-Chr4:4641565 0 wgd
Bma10g00129 Bma-Chr10:1167298 Bma04g00527 Bma-Chr4:4641565 0 wgd
Bma04g00527 Bma-Chr4:4641565 Bma04g01538 Bma-Chr4:51436269 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57167 PF07526 POX 2.10E-47 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00527 - - jre:108982860 858.981