Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00537 ATGTCAGGCGGTGCTGGAGCTCAAAATCATCAGGTTCAGCCTCCGCCGGCGTCTAGCGGCCAGATCGTGCCTCCATTGAGGCGGCACTTGGCTTTTGCGTCGACGAAGCCGCCTTTCTTTCCTTCTGATGATTATCATCGCTTCAACGGCGGTAATTGCAAAGTGTTTGATCACGAGCCTGAAGTAATTGTTGTTAAGTCTCCACAATTAAAGCGAAAGGGTGCATCAGATCACATAGGCATTCAATCAAATGAGTGGACCAGAAGTCCTGGATGTACTAAACCCATTAATAGTCCTTTTCAGACACCTGCATCATCATCGAAAGGAGAAAGGGTGTATAACGTGCCAAAGGCTTCAAAGGGTTTTAGAACTGGGCCTCAAACACCTATTTCAACTGCCAGCTGCTCTTCTCCTCTTACTCCAGCAAGCAATTGTCGATATGACAGTTCCCTAGGTATTTTAACAAAAAAGTTTATCAATTTGATAAAGCATGCTGAGGATGGGATTCTTGACTTAAACAAGGCTGCAGAAACTTTGGAGGTGCAAAAAAGGAGAATATACGACATAACAAATGTCCTGGAAGGAATAGGTCTTATTGAAAAGAAGCTCAAGAACAGAATACGGTGGAAGGGCTTTTATGATTCGAAGCCTGGGAATGTGGATGGTGATGTCTCCATATTACAGGCAGAAGTTGGAAGCCTTACCATTGAAGAGCGCAGATTAGATGACAAAACAAGAGAATTGCAGGAAAGATTGAGGTCCTTGAGTGAAGATATAAACAATCAAAAATGGCTTTTTGTTACAGAAGAAGATATTAAAAGCCTACCTGGCTTTCAGAATGAAACACTAATAGCCGTTAAAGCTCCACATGGCACAACTCTTGAAGTCCCAGATCCTGAAGAAGATATTGATTATCCTCAGAAGAGATATAGGATAATTCTCAGAAGCACAATGGGTCCGATTGATGTTTACCTTGTCAGTAAGTTTGAGGAGAAATTTGAGGAGATGGAAGTGATTGAACCATCCCAGAGCTTCCAACTAGTTTCCAGTTCTGGGTCTAACGAACAATCAGCAATAGAAATGCCCAATTTGGAGATCATTCAAAAGGAAGTAACTGAGCCAAATCCACGACAGTCCAATCAAAAAAGCTTTGATTTCAATGACTCCCATGATTATTCTGGAGTGATGAAGATTGTTCCTTCAGAATCTGATAATGATGCTGATTACTGGCTTTTATCTGATGCTGAAGTTAGCATTACGGACATGTGGAGAACTGAATCGAGTGTTAGTTGGAATGAGCCAGACATGCTTCATGCAGACTTTGGGATATCTGATCTCGGAGCCACAATGTCTCAAACTCCTCTACCTGATATTGCTGATGCACCTACTACTGCTGTCAACTTTCATCTAAGATGA 1416 42.09 MSGGAGAQNHQVQPPPASSGQIVPPLRRHLAFASTKPPFFPSDDYHRFNGGNCKVFDHEPEVIVVKSPQLKRKGASDHIGIQSNEWTRSPGCTKPINSPFQTPASSSKGERVYNVPKASKGFRTGPQTPISTASCSSPLTPASNCRYDSSLGILTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGFYDSKPGNVDGDVSILQAEVGSLTIEERRLDDKTRELQERLRSLSEDINNQKWLFVTEEDIKSLPGFQNETLIAVKAPHGTTLEVPDPEEDIDYPQKRYRIILRSTMGPIDVYLVSKFEEKFEEMEVIEPSQSFQLVSSSGSNEQSAIEMPNLEIIQKEVTEPNPRQSNQKSFDFNDSHDYSGVMKIVPSESDNDADYWLLSDAEVSITDMWRTESSVSWNEPDMLHADFGISDLGATMSQTPLPDIADAPTTAVNFHLR 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4712663 4716307 + Bma019010.1 Bma04g00537 80906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00537 471 Coils Coil 238 258 - -
Bma04g00537 471 Pfam E2F/DP family winged-helix DNA-binding domain 148 211 IPR003316 GO:0005667|GO:0006355
Bma04g00537 471 PANTHER E2F TRANSCRIPTION FACTOR 3-RELATED 13 462 - -
Bma04g00537 471 Pfam E2F transcription factor CC-MB domain 227 327 IPR032198 GO:0046983
Bma04g00537 471 Coils Coil 162 182 - -
Bma04g00537 471 CDD E2F_DD 224 327 IPR032198 GO:0046983
Bma04g00537 471 Gene3D - 140 213 IPR036388 -
Bma04g00537 471 Gene3D - 218 328 - -
Bma04g00537 471 MobiDBLite consensus disorder prediction 1 23 - -
Bma04g00537 471 SUPERFAMILY E2F-DP heterodimerization region 224 328 IPR037241 -
Bma04g00537 471 MobiDBLite consensus disorder prediction 1 17 - -
Bma04g00537 471 SMART E2F_TDP_2 146 211 IPR003316 GO:0005667|GO:0006355
Bma04g00537 471 SUPERFAMILY Winged helix DNA-binding domain 146 209 IPR036390 -
Bma04g00537 471 PANTHER TRANSCRIPTION FACTOR E2F 13 462 IPR015633 GO:0000978|GO:0006357
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00537 K06620 E2F3; transcription factor E2F3 - zju:107432237 616.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00799 Bma-Chr3:7397064 Bma04g00537 Bma-Chr4:4712663 2.48E-06 dispersed
Bma04g00537 Bma-Chr4:4712663 Bma11g00246 Bma-Chr11:2168670 1.51E-137 dispersed
Bma01g01997 Bma-Chr1:74192726 Bma04g00537 Bma-Chr4:4712663 1.70E-29 wgd
Bma04g00537 Bma-Chr4:4712663 Bma07g00205 Bma-Chr7:2489691 6.04E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g917 . Blo12g00527 . Bda03g00671 . . . . . . . Cma07g00828 Car03g01015 Car07g00815 . Cpe10g00310 . Bhi03g01787 Tan03g1249 . . . . . Cla04g01021 Cam04g1063 Cec04g1183 Cco04g1250 Clacu04g1090 Cmu04g1074 Cre04g1133 Cone3ag0151 Cone10ag0135 . . Lsi01g01191 Csa06g02714 Chy08g00971 . . . . . Bpe04g00633 . . Bma04g00537 . Cmo03g01117 Cmo07g00858 . . . . . Cpe19g00497 . . . . . . . . . . . . . . . . . Cme08g01161
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g00799 CCT 3 376 E2F-DP Transcription Factor Family AT3G48160 56.7 4.4e-103 371.7
Bma10g01087 . 80 283 E2F-DP Transcription Factor Family AT5G02470 55.1 7.5e-60 227.6
Bma04g00537 . 14 467 E2F-DP Transcription Factor Family AT2G36010 53.2 4.2e-124 441.8
Bma07g00205 BCT 939 1324 E2F-DP Transcription Factor Family AT2G36010 55.8 4.7e-107 385.2
Bma11g00246 BCT 4 347 E2F-DP Transcription Factor Family AT2G36010 57.9 9.4e-100 360.9
Bma07g00205 BCT 962 1352 E2F-DP Transcription Factor Family AT5G22220 57.4 2.4e-100 362.8
Bma11g00246 BCT 5 350 E2F-DP Transcription Factor Family AT5G22220 58.1 7.9e-96 347.8
Bma04g00537 . 29 433 E2F-DP Transcription Factor Family AT5G22220 50.1 6.7e-87 318.2
Bma10g01087 . 80 283 E2F-DP Transcription Factor Family AT5G02470 55.1 7.5e-60 227.6
Bma07g00205 BCT 962 1352 E2F-DP Transcription Factor Family AT5G22220 57.4 2.4e-100 362.8
Bma11g00246 BCT 5 350 E2F-DP Transcription Factor Family AT5G22220 58.1 7.9e-96 347.8
Bma04g00537 . 29 433 E2F-DP Transcription Factor Family AT5G22220 50.1 6.7e-87 318.2
Bma04g00537 . 14 467 E2F-DP Transcription Factor Family AT2G36010 53.2 4.2e-124 441.8
Bma07g00205 BCT 939 1324 E2F-DP Transcription Factor Family AT2G36010 55.8 4.7e-107 385.2
Bma11g00246 BCT 4 347 E2F-DP Transcription Factor Family AT2G36010 57.9 9.4e-100 360.9
Bma03g00799 CCT 3 376 E2F-DP Transcription Factor Family AT3G48160 56.7 4.4e-103 371.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005036 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57168 PF16421 E2F_CC-MB 6.20E-32 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00537 Bma_Chr04 FPKM 178.740921 187.84787 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0