Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00537 ATGTCAGGCGGTGCTGGAGCTCAAAATCATCAGGTTCAGCCTCCGCCGGCGTCTAGCGGCCAGATCGTGCCTCCATTGAGGCGGCACTTGGCTTTTGCGTCGACGAAGCCGCCTTTCTTTCCTTCTGATGATTATCATCGCTTCAACGGCGGTAATTGCAAAGTGTTTGATCACGAGCCTGAAGTAATTGTTGTTAAGTCTCCACAATTAAAGCGAAAGGGTGCATCAGATCACATAGGCATTCAATCAAATGAGTGGACCAGAAGTCCTGGATGTACTAAACCCATTAATAGTCCTTTTCAGACACCTGCATCATCATCGAAAGGAGAAAGGGTGTATAACGTGCCAAAGGCTTCAAAGGGTTTTAGAACTGGGCCTCAAACACCTATTTCAACTGCCAGCTGCTCTTCTCCTCTTACTCCAGCAAGCAATTGTCGATATGACAGTTCCCTAGGTATTTTAACAAAAAAGTTTATCAATTTGATAAAGCATGCTGAGGATGGGATTCTTGACTTAAACAAGGCTGCAGAAACTTTGGAGGTGCAAAAAAGGAGAATATACGACATAACAAATGTCCTGGAAGGAATAGGTCTTATTGAAAAGAAGCTCAAGAACAGAATACGGTGGAAGGGCTTTTATGATTCGAAGCCTGGGAATGTGGATGGTGATGTCTCCATATTACAGGCAGAAGTTGGAAGCCTTACCATTGAAGAGCGCAGATTAGATGACAAAACAAGAGAATTGCAGGAAAGATTGAGGTCCTTGAGTGAAGATATAAACAATCAAAAATGGCTTTTTGTTACAGAAGAAGATATTAAAAGCCTACCTGGCTTTCAGAATGAAACACTAATAGCCGTTAAAGCTCCACATGGCACAACTCTTGAAGTCCCAGATCCTGAAGAAGATATTGATTATCCTCAGAAGAGATATAGGATAATTCTCAGAAGCACAATGGGTCCGATTGATGTTTACCTTGTCAGTAAGTTTGAGGAGAAATTTGAGGAGATGGAAGTGATTGAACCATCCCAGAGCTTCCAACTAGTTTCCAGTTCTGGGTCTAACGAACAATCAGCAATAGAAATGCCCAATTTGGAGATCATTCAAAAGGAAGTAACTGAGCCAAATCCACGACAGTCCAATCAAAAAAGCTTTGATTTCAATGACTCCCATGATTATTCTGGAGTGATGAAGATTGTTCCTTCAGAATCTGATAATGATGCTGATTACTGGCTTTTATCTGATGCTGAAGTTAGCATTACGGACATGTGGAGAACTGAATCGAGTGTTAGTTGGAATGAGCCAGACATGCTTCATGCAGACTTTGGGATATCTGATCTCGGAGCCACAATGTCTCAAACTCCTCTACCTGATATTGCTGATGCACCTACTACTGCTGTCAACTTTCATCTAAGATGA 1416 42.09 MSGGAGAQNHQVQPPPASSGQIVPPLRRHLAFASTKPPFFPSDDYHRFNGGNCKVFDHEPEVIVVKSPQLKRKGASDHIGIQSNEWTRSPGCTKPINSPFQTPASSSKGERVYNVPKASKGFRTGPQTPISTASCSSPLTPASNCRYDSSLGILTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIRWKGFYDSKPGNVDGDVSILQAEVGSLTIEERRLDDKTRELQERLRSLSEDINNQKWLFVTEEDIKSLPGFQNETLIAVKAPHGTTLEVPDPEEDIDYPQKRYRIILRSTMGPIDVYLVSKFEEKFEEMEVIEPSQSFQLVSSSGSNEQSAIEMPNLEIIQKEVTEPNPRQSNQKSFDFNDSHDYSGVMKIVPSESDNDADYWLLSDAEVSITDMWRTESSVSWNEPDMLHADFGISDLGATMSQTPLPDIADAPTTAVNFHLR 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4712663 4716307 + Bma019010.1 Bma04g00537 80906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00537 471 Coils Coil 238 258 - -
Bma04g00537 471 Pfam E2F/DP family winged-helix DNA-binding domain 148 211 IPR003316 GO:0005667|GO:0006355
Bma04g00537 471 PANTHER E2F TRANSCRIPTION FACTOR 3-RELATED 13 462 - -
Bma04g00537 471 Pfam E2F transcription factor CC-MB domain 227 327 IPR032198 GO:0046983
Bma04g00537 471 Coils Coil 162 182 - -
Bma04g00537 471 CDD E2F_DD 224 327 IPR032198 GO:0046983
Bma04g00537 471 Gene3D - 140 213 IPR036388 -
Bma04g00537 471 Gene3D - 218 328 - -
Bma04g00537 471 MobiDBLite consensus disorder prediction 1 23 - -
Bma04g00537 471 SUPERFAMILY E2F-DP heterodimerization region 224 328 IPR037241 -
Bma04g00537 471 MobiDBLite consensus disorder prediction 1 17 - -
Bma04g00537 471 SMART E2F_TDP_2 146 211 IPR003316 GO:0005667|GO:0006355
Bma04g00537 471 SUPERFAMILY Winged helix DNA-binding domain 146 209 IPR036390 -
Bma04g00537 471 PANTHER TRANSCRIPTION FACTOR E2F 13 462 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00799 Bma-Chr3:7397064 Bma04g00537 Bma-Chr4:4712663 2.48E-06 dispersed
Bma04g00537 Bma-Chr4:4712663 Bma11g00246 Bma-Chr11:2168670 1.51E-137 dispersed
Bma01g01997 Bma-Chr1:74192726 Bma04g00537 Bma-Chr4:4712663 1.70E-29 wgd
Bma04g00537 Bma-Chr4:4712663 Bma07g00205 Bma-Chr7:2489691 6.04E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57168 PF16421 E2F_CC-MB 6.20E-32 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00537 K06620 - zju:107432237 616.305