Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00567 ATGGAGGAGAAGGACAGCCCCTTTTCTGGATCGCCCGGAATCTCGGAGACCGAGTCGCCTCCGGCTCTAATGGCCGAGATGGCGCCTAAAGTGGCCGCCGTTGATGCGGAAAGAGGCTTTTTACCTTCGTCAACGATGATATCGGCGACTGAGAGAAGCGGAGGAGGAGGGTCGGGGAGTGGCGATTTTCTCATGAAAAAGAAGAGGGGAAGGCCGAGAAAGTATGATTCGGATGGGAACTTGAGCTTGGCTTACCAGAAAATGGCTTCGCCGGATGGGTTTTCGTTGTCACCCACTTCTCCTTCTGAGTTTTCGTCCAAAAAAGGTCGAGGTAGGGGTGCTGGGTCTGGAAACTGGCAGCTTCTTGCTTCATTAGGTGAATTGTTTGCTAATACTGCTGGAGGAGACTTTACGCCGCATGTTGTCACTGTTAACACCGGAGAGGATGTTGCGGCGAAAATTCTTTCGTTTTCACAGAAAGGGCCGAGAGGAATTTGCGTTCTATCGGCAAATGGAGCTGTTTCCAATGTTACCATCCGCCAACCAGGCTCTTCTGGTGGTATTTTGACGTACGAGGCATGTGCTTTGTTCTCCATCTCTATCTCCAGATTTGGACGATTTGAGATACTGTCTTTATCTGGGTCCTTCACAGTTACTGACAGTGATGGTATGAAGAGTAGAACAGGTGGATTAAGTGTATCGTTAGCGGGTCCAGATGGTCGGGTCATCGGTGGTGGTATCGCTGGTTTATTAATGGCTGCTAGCCCTATCCAAATTGTTGTCGGAAGTTTTGTGCCGAATAGCTTCAAGATGCATAAAAGAAAGAACCAACGAGAATATGCAATGTCTCCCCCTATTAGAGCTGTGCCAGAGGCTGTCTCGTCAGCAAGGCCGATCTCACAAGCGAATCCCGACAGCGAAATCTGTTTGGCTCCGTCGACGGGGCAAACAAACGGGGAACTGGATAGGTTGGGGAGCGATAAGCACAATCTGAATTTTCCGTCGGAGAATACTTCTTGGACTATATCGGCTCCATCGTTATCCGATCAGAGGCATTCTCCTGATATTAACATTTCTATGTCGTTTGGAGAACAGAACTAA 1101 49.05 MEEKDSPFSGSPGISETESPPALMAEMAPKVAAVDAERGFLPSSTMISATERSGGGGSGSGDFLMKKKRGRPRKYDSDGNLSLAYQKMASPDGFSLSPTSPSEFSSKKGRGRGAGSGNWQLLASLGELFANTAGGDFTPHVVTVNTGEDVAAKILSFSQKGPRGICVLSANGAVSNVTIRQPGSSGGILTYEACALFSISISRFGRFEILSLSGSFTVTDSDGMKSRTGGLSVSLAGPDGRVIGGGIAGLLMAASPIQIVVGSFVPNSFKMHKRKNQREYAMSPPIRAVPEAVSSARPISQANPDSEICLAPSTGQTNGELDRLGSDKHNLNFPSENTSWTISAPSLSDQRHSPDINISMSFGEQN 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5132139 5134135 + Bma019048.1 Bma04g00567 80936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00567 366 MobiDBLite consensus disorder prediction 330 366 - -
Bma04g00567 366 MobiDBLite consensus disorder prediction 1 30 - -
Bma04g00567 366 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 273 - -
Bma04g00567 366 MobiDBLite consensus disorder prediction 92 106 - -
Bma04g00567 366 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 265 IPR005175 -
Bma04g00567 366 CDD DUF296 138 264 IPR005175 -
Bma04g00567 366 MobiDBLite consensus disorder prediction 300 366 - -
Bma04g00567 366 Gene3D - 139 282 - -
Bma04g00567 366 MobiDBLite consensus disorder prediction 43 79 - -
Bma04g00567 366 ProSiteProfiles PPC domain profile profile. 134 286 IPR005175 -
Bma04g00567 366 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 18 361 IPR039605 GO:0003680
Bma04g00567 366 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 18 361 - -
Bma04g00567 366 MobiDBLite consensus disorder prediction 92 112 - -
Bma04g00567 366 MobiDBLite consensus disorder prediction 300 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01960 Bma-Chr1:72759606 Bma04g00567 Bma-Chr4:5132139 0 dispersed
Bma04g00567 Bma-Chr4:5132139 Bma12g00188 Bma-Chr12:2557149 3.32E-72 dispersed
Bma01g01969 Bma-Chr1:73398310 Bma04g00567 Bma-Chr4:5132139 1.32E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00567 - - tcc:18598144 390.963