Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00571 ATGCAATATTATTCACAGTCTACGGGTCATGGTAATTCAAAAGGGGGCGGCGACGGCGGAAGTACAGCCGGCAGTGTTTCTGCTCTGGTTTTGGCCTTGCCAGATACCCCGAGACGTCATCCAATTTACCGAGGAGTCCGACGCCGAAGTACCGGAAAATGGGTCTCTGAAATTCGAGAGCCCAGAAAACCTAATAGAATTTGGCTAGGTACATATTCGACGCCGGAAATGGCCGCCGTTGCTTACGACGTGGCTGCACTTGCGTTGAAAGGTCGAGACGCCGAACTTAATTTTCCAAACTCAGCGGCTTCTTTGCCAGTTCCGGTATCATCCTGTCCCCGTGATATCCAAGCCGCTGCTTCTTCCGCCGCCGCTGCAATTGGAGCCGCTGCCGCCTCTATGGGGCTGACTAAAGTGAATTATGAAAATAACGGGGAAAGAACCCTAAAAATGGAGGCTGAAAAACCGGCGATCAGTGAGTTTTTTGACGAGGATTTAATCTTCGATATGCCAAATGTCATAATGAATATGGCGGAGGGGATGCTTCTCAGCCCTCCTCGCCTAAACATGGCGAGTGATTACGCACCAGACAGTGAAGTAGTTGAAGAGCAAACTCTTTGGACATTCACTTGA 633 49.92 MQYYSQSTGHGNSKGGGDGGSTAGSVSALVLALPDTPRRHPIYRGVRRRSTGKWVSEIREPRKPNRIWLGTYSTPEMAAVAYDVAALALKGRDAELNFPNSAASLPVPVSSCPRDIQAAASSAAAAIGAAAASMGLTKVNYENNGERTLKMEAEKPAISEFFDEDLIFDMPNVIMNMAEGMLLSPPRLNMASDYAPDSEVVEEQTLWTFT 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5170740 5171372 + Bma019052.1 Bma04g00571 80940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00571 210 Gene3D AP2/ERF domain 42 101 IPR036955 GO:0003700|GO:0006355
Bma04g00571 210 CDD AP2 41 101 IPR001471 GO:0003700|GO:0006355
Bma04g00571 210 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Bma04g00571 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 29 209 - -
Bma04g00571 210 MobiDBLite consensus disorder prediction 1 20 - -
Bma04g00571 210 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Bma04g00571 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 29 209 - -
Bma04g00571 210 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Bma04g00571 210 MobiDBLite consensus disorder prediction 1 21 - -
Bma04g00571 210 SUPERFAMILY DNA-binding domain 42 101 IPR016177 GO:0003677
Bma04g00571 210 PRINTS Ethylene responsive element binding protein signature 81 101 IPR001471 GO:0003700|GO:0006355
Bma04g00571 210 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00571 Bma-Chr4:5170740 Bma14g02069 Bma-Chr14:44058205 5.84E-47 dispersed
Bma04g01592 Bma-Chr4:51857306 Bma04g00571 Bma-Chr4:5170740 3.39E-26 dispersed
Bma04g00571 Bma-Chr4:5170740 Bma10g00080 Bma-Chr10:807382 8.23E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57172 PF00847 AP2 4.80E-12 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00571 - - jre:108985007 236.498