Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00582 ATGGACAGAGAGTGGGGGTCGAAGCCGGGGAGTGGAGGCGCTGCGTCTGCGCAGAATGAAGCAATCGACCGGAGAGAGCGGCTCAGAAGGCTGGCTCTTGAGACCATCGACCTTGCAAAAGACCCCTATTTTATGCGTAACCATCTGGGGAGTTACGAGTGTAAGCTTTGTTTGACTCTGCACAACAATGAGGGAAATTACTTGGCGCACACACAGGGGAAGCGGCATCAAACTAATTTGGCAAAACGAGCTGCTCGTGAGGCCAAGGATGCTCCTGCTCAGCCCCAGCCTCACAAGCGCAAAGTCTCTGTACGCAAAACAGTTAAAATTGGCAGACCTGGATACAGGGTTACAAAGCAATTCGATCCGGAGACAAAGCAGAGATCTTTACTTTTTCAGAGAGTTCAACCTTTTGATAAAAGTTACCAGTACCTTTTGGTTGCAGCTGAGCCATATGAAATCATTGCTTTCAAGGTTCCTAGCACAGAAATAGACAAATCAACTCCAAAGTTTTTCTCGAATTGGGATCCAGACTCGAAAATGTTCACGTTGCAATTATACTTCAAAATCAAGCCACCTGAACTAATCAAGCCTCAAAGTGCTCCAGCACCAAACGGCACAGCAGTTCCCGGAGCTCCACCGAGACCTTTGCCCCCTCCCCCACCACCCACCCTAGGTCTACCAGCAAGTGCACCTCCTCCTCCTCCTGTCTTGACCAACGGCCCTAGGCCAATGCCTCCTACCGGAACTCCACCTGCCCCTCCTCCGCCACCTAGCATGGGAAATTTCAATCCTGGTTTGCAGATGGGTCAGCCTCCACATGGTTTTCCATCCCTGCTGATGCAGGGACAGGGAGTTCGGCCACCACCACCTCCTCCAAACATGGGA 888 51.35 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDPETKQRSLLFQRVQPFDKSYQYLLVAAEPYEIIAFKVPSTEIDKSTPKFFSNWDPDSKMFTLQLYFKIKPPELIKPQSAPAPNGTAVPGAPPRPLPPPPPPTLGLPASAPPPPPVLTNGPRPMPPTGTPPAPPPPPSMGNFNPGLQMGQPPHGFPSLLMQGQGVRPPPPPPNMG 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5574587 5576760 - Bma031103 Bma04g00582 80951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00582 296 Gene3D Classic Zinc Finger 46 89 - -
Bma04g00582 296 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Bma04g00582 296 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Bma04g00582 296 MobiDBLite consensus disorder prediction 1 21 - -
Bma04g00582 296 Gene3D - 133 194 - -
Bma04g00582 296 SMART CactinC_cactus_3 89 194 - -
Bma04g00582 296 MobiDBLite consensus disorder prediction 207 262 - -
Bma04g00582 296 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Bma04g00582 296 MobiDBLite consensus disorder prediction 197 296 - -
Bma04g00582 296 Pfam Zinc-finger of C2H2 type 52 76 - -
Bma04g00582 296 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 135 182 IPR031781 -
Bma04g00582 296 PANTHER SPLICING FACTOR 3A SUBUNIT 2 133 290 - -
Bma04g00582 296 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01939 Bma-Chr1:71542278 Bma04g00582 Bma-Chr4:5574587 1.62E-144 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00582 K12826 - sspl:121792200 395.971