Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma04g00584 | ATGCCTTTCCATAAGTTTGCTATTGGCCGGCCGCAAGAGGCCCTCGAACCGGAGCTATGGAAGTGCGGTGTGGCTGAGTTTATCTCGACGCTGATATTCGTTTTCGCCGGTCAAGGGTCGGGAATGGCGTTTGCCAAGTTGACGGACAACGGCTCTACAACCGAGGCCTCGATAATCGCAGCCTCTCTCGCCCATGGTTTCGGCCTCTTCATCGGCGTCGCTGTCAGCTTTAACATCTCCGGCGGCCACGTCAACCCAGCTGTTACCTTCGGTGCATTCGTCGGTGGAAATGTTACTCTCATCCGCCTCGTTGTTTACTGGATTGGTCAGCTTCTCGGCTCTGTTGCCGCCTGCGGTCTTCTCAAATTCACCACCCATGGCATGACTACAACGGCGTTTACGTTCTCCTCAGATATTACAGTGTGGAACGCCTTCGTTTTCGAGATCGTTATGACATTCGGTCTTGTCTACACAGTCTATGCCACGGCCATTGATCCCAACAAAGGAACTCTAAAGACGATTGCTCCGATCGCAATCGGTTTCATTGTCGGCGCCAATGTTTTGGCCGGGGGTGCCTTCGAGGGAGCTTCGATGAACCCCGCCGTCTCATTTGGACCGGCGTTGGTGAGCTGGAGCTGGGACCATCAATGGGTTTACTGGGCTGGACCACTCATTGGCGGCGGTATCGCCGGCGTTGTTTTTGAAGGGTCGGGAATGGCGTTTGCCAAGTTGACGGACAACGGCTCTACAACCGAGGCCTCGATAATCGCAGCCTCTCTCGCCCATGGTTTCGGCCTCTTCATCGGCGTCGCTGTCAGCTTTAACATCTCCGGCGGCCACGTCAACCCAGCTGTTACCTTCGGTGCATTCGTCGGTGGAAATGTTACTCTCATCCGCCTCGTTGTTTACTGGATTGGTCAGCTTCTCGGCTCCGTTGCTGCCTGCGGTCTTCTCAAATTCACCACCCACGGCATGACTACAACGGCGTTTACGTTCTCCTCAGATATTACAGTGTGGAACGCCTTCGTTTTCGAGATCGTTATGACATTCGGTCTTGTCTACACAGTCTATGCCACGGCCATTGATCCCAACAAAGGAACTCTAAAGACGATTGCTCCGATCGCAATCGGTTTCATTGTCGGCGCCAATGTTTTGGCCGGGGGTGCCTTCGAGGGAGCTTCGATGAACCCCGCCGTCTCATTTGGACCGGCGTTGGTGAGCTGGAGCTGGGACCATCAATGGGTTTACTGGGCTGGACCACTCATTGGCGGCGGTATTGCCGGCCTTGTTTTTGAAGGTTTATTCATCAGGCAAAACCACGAGCAACTCCCTACCAATGATTTCTGA | 1347 | 54.12 | MPFHKFAIGRPQEALEPELWKCGVAEFISTLIFVFAGQGSGMAFAKLTDNGSTTEASIIAASLAHGFGLFIGVAVSFNISGGHVNPAVTFGAFVGGNVTLIRLVVYWIGQLLGSVAACGLLKFTTHGMTTTAFTFSSDITVWNAFVFEIVMTFGLVYTVYATAIDPNKGTLKTIAPIAIGFIVGANVLAGGAFEGASMNPAVSFGPALVSWSWDHQWVYWAGPLIGGGIAGVVFEGSGMAFAKLTDNGSTTEASIIAASLAHGFGLFIGVAVSFNISGGHVNPAVTFGAFVGGNVTLIRLVVYWIGQLLGSVAACGLLKFTTHGMTTTAFTFSSDITVWNAFVFEIVMTFGLVYTVYATAIDPNKGTLKTIAPIAIGFIVGANVLAGGAFEGASMNPAVSFGPALVSWSWDHQWVYWAGPLIGGGIAGLVFEGLFIRQNHEQLPTNDF | 448 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 5587666 | 5596652 | + | Bma019071.1 | Bma04g00584 | 80953 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma04g00584 | 448 | Gene3D | Glycerol uptake facilitator protein. | 235 | 448 | IPR023271 | - | |
| Bma04g00584 | 448 | Gene3D | Glycerol uptake facilitator protein. | 4 | 234 | IPR023271 | - | |
| Bma04g00584 | 448 | ProSitePatterns | MIP family signature. | 83 | 91 | IPR022357 | - | |
| Bma04g00584 | 448 | PANTHER | AQUAPORIN TIP1-1 | 235 | 447 | - | - | |
| Bma04g00584 | 448 | PANTHER | AQUAPORIN-8 | 1 | 235 | IPR034294 | - | |
| Bma04g00584 | 448 | ProSitePatterns | MIP family signature. | 280 | 288 | IPR022357 | - | |
| Bma04g00584 | 448 | SUPERFAMILY | Aquaporin-like | 234 | 444 | IPR023271 | - | |
| Bma04g00584 | 448 | SUPERFAMILY | Aquaporin-like | 13 | 235 | IPR023271 | - | |
| Bma04g00584 | 448 | CDD | MIP | 236 | 432 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Bma04g00584 | 448 | Pfam | Major intrinsic protein | 236 | 431 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Bma04g00584 | 448 | Pfam | Major intrinsic protein | 17 | 234 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Bma04g00584 | 448 | PANTHER | AQUAPORIN TIP1-1 | 1 | 235 | - | - | |
| Bma04g00584 | 448 | PRINTS | Major intrinsic protein family signature | 21 | 40 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Bma04g00584 | 448 | PRINTS | Major intrinsic protein family signature | 102 | 121 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Bma04g00584 | 448 | PRINTS | Major intrinsic protein family signature | 147 | 165 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Bma04g00584 | 448 | PRINTS | Major intrinsic protein family signature | 217 | 237 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Bma04g00584 | 448 | PRINTS | Major intrinsic protein family signature | 180 | 202 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Bma04g00584 | 448 | PRINTS | Major intrinsic protein family signature | 65 | 89 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Bma04g00584 | 448 | CDD | MIP | 24 | 235 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
| Bma04g00584 | 448 | PANTHER | AQUAPORIN-8 | 235 | 447 | IPR034294 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma02g00090 | Bma-Chr2:785914 | Bma04g00584 | Bma-Chr4:5587666 | 7.32E-61 | dispersed | |
| Bma04g00584 | Bma-Chr4:5587666 | Bma12g01165 | Bma-Chr12:44195489 | 8.21E-45 | dispersed | |
| Bma01g01942 | Bma-Chr1:71826589 | Bma04g00584 | Bma-Chr4:5587666 | 1.97E-134 | wgd | |
| Bma10g00051 | Bma-Chr10:539004 | Bma04g00584 | Bma-Chr4:5587666 | 8.23E-110 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma04g00584 | K09873 | - | jre:108996816 | 377.867 |