Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00585 ATGCTGGGTCGAACCTACATTGTCCTGATTTCTCTTCTAATCTCTCTTTCCGAGCTTTCTGCGGCATTATCCTTGAACATCACTCTTTCGGGCCATCATCCCAACCCAGATGAGGTTGTTCAAGAATTTCACAGGAAAGTAAATGCTTCCATCACCAGAAGGGAAACTTTGCAAATCTCCAAAAACGTGGATTCTTCTTGCTTCACCGGAAACCCCATTGACGATTGCTGGAAATGCGATCCCAACTGGCCCAACGACCGCCAGAGGCTCGCCGATTGCTCTATCGGCTTCGGCCAATACGCTCTTGGCGGCAAAAATGGCGAGTTTTACATCGTCACAGACGATTCAGATGATGACCCCGTCAATCCGAAACCTGGGACGCTAAGATACGCGGTCATTCAGACGCAGCCTCTGTGGATCGTCTTCCCCAGTAACATGCTTATCAAGCTCTCACAAGAGCTCATCTTCAATAGCTTCAAAACCCTGGATGGCCGGGGAGCTAACGTTCACATTGTCGGCGGTGGGTGCATCACGTTGCAGTATATAAGCAATGTTATTATTCACAATATTCATATCCACCATTGCCATCCTTCTGGTAATACTATGGTTCGGTCGAGCCCAACGCATTTCGGATATAGAACAAAATCTGACGGTGATGGAATCTCCATCTTCGGATCAAGAGACATATGGATCGACCACTGTTCGCTATCGCATTGCAAGGACGGTCTGATCGACGCTGTAATGGGGTCCACCGGAATAACGATATCCAACAATTACTTTTCCCACCACGACGAGGTGATGCTGCTCGGCCACAGCGACAGCTACTTGCCGGACTCCAGCATGCAGGTGACGATCGCCTTCAACCACTTCGGCGAGAACCTCGTTCAGCGAATGCCGCGGTGCCGGCGAGGCTACATTCACATTGTCAACAATGACTTCACGCGGTGGGAAATGTACGCGATCGGCGGGAGCGGAAATCCCACTATCAACAGCCAGGGGAACCGATTCACAGCTCCATACGATCGAAACTCGAAAGAGAGATTTACAAACGAACTAACGTGGGAGCAGGTGACGAAGAGAGTGGACACGGATGAGGCGGAGTGGAGGGGATGGAATTGGAGATCGGAGGGAGATATTTTGGTAAACGGAGCATATTTCGTTGCATCCGGGGAAGGATTGGAGGTGAAATACGAGAAGGCATACAGCGTTGAACCCAAGTCGGCTGCTCTAATCGATCGCCTAACCTACCATGCCGGGCCACTGGGTGTAGGCGGCCGGGGCAACAATTTGGGAATGTGGAGCACAGGGCTCAACGGTGGAGGAGGTGGCTTACCAGGATTTGATGGCCCTGAATACACGGACGACATGTCGGGAAGCAAACGACTGTTAAAGCCAGCCCATCACCTCTTATTCATCTTCACTCTATTGCTTTAG 1434 50.77 MLGRTYIVLISLLISLSELSAALSLNITLSGHHPNPDEVVQEFHRKVNASITRRETLQISKNVDSSCFTGNPIDDCWKCDPNWPNDRQRLADCSIGFGQYALGGKNGEFYIVTDDSDDDPVNPKPGTLRYAVIQTQPLWIVFPSNMLIKLSQELIFNSFKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTMVRSSPTHFGYRTKSDGDGISIFGSRDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDSYLPDSSMQVTIAFNHFGENLVQRMPRCRRGYIHIVNNDFTRWEMYAIGGSGNPTINSQGNRFTAPYDRNSKERFTNELTWEQVTKRVDTDEAEWRGWNWRSEGDILVNGAYFVASGEGLEVKYEKAYSVEPKSAALIDRLTYHAGPLGVGGRGNNLGMWSTGLNGGGGGLPGFDGPEYTDDMSGSKRLLKPAHHLLFIFTLLL 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5602715 5604516 + Bma019072.1 Bma04g00585 80954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00585 477 PANTHER PECTATE LYASE 12-RELATED 2 440 - -
Bma04g00585 477 SMART amb_all 145 342 IPR002022 -
Bma04g00585 477 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Bma04g00585 477 PRINTS Pollen allergen Amb family signature 400 423 IPR018082 -
Bma04g00585 477 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Bma04g00585 477 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Bma04g00585 477 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Bma04g00585 477 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Bma04g00585 477 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Bma04g00585 477 Gene3D - 70 422 IPR012334 -
Bma04g00585 477 PANTHER PECTATE LYASE 18-RELATED 2 440 IPR045032 GO:0030570
Bma04g00585 477 SUPERFAMILY Pectin lyase-like 59 419 IPR011050 -
Bma04g00585 477 Pfam Pectate lyase 156 336 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00061 Bma-Chr3:510136 Bma04g00585 Bma-Chr4:5602715 0 dispersed
Bma04g00585 Bma-Chr4:5602715 Bma08g00920 Bma-Chr8:48179296 0 dispersed
Bma04g00585 Bma-Chr4:5602715 Bma03g00362 Bma-Chr3:2697882 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00585 K01728 - csv:101203012 752.281