Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00608 ATGGAATCGAAAGAGATGACAAAGGAGGCCGAAAAATGCTTAGATCCTCAACTATGGCACGCCTGTGCTGGAGGAATGGTTCAAATCCCACCATTAGACACCAAGGTGTTCTACTTTCCTCAGGGCCATGCAGAGCATGCCAGTGGGCCTGTTGATTTCCGCAGTTCCCCGAGACTTCCACCGTTTATTGCTTGTCGAGTTTCTGCCGTTAAATTCATGGCTGATCTGGAAACTGATGAGGTTTATTCCAAAATCAAATTGGTTCCCCTAAACAGGAGTGAGCTCGATTTTGAGGAAGATAGAATTTGTGGGCTTAATGTGGCTGAAGTTCAGGATAAACCCGCATCGTTTGCAAAGACTTTGACTCAATCTGATGCTAATAACGGTGGGGGATTCTCTGTTCCAAGATATTGTGCGGAGACGATATTTCCACGATTGGATTACAATGTGGACCCACCTGTTCAGAACATTCTCGTTAAGGATGTTCATGGGGAGATTTGGAAATTCAGGCACATTTACAGAGGGACGCCTAGAAGACATCTCTTGACTACCGGCTGGAGTACCTTTGTGAATCATAAGAAGCTCGTTGCAGGTGATTCTATCGTTTTTCTAAGAGCAGAAAACGGAGACTTATGCGTCGGAGTTCGAAGAGCAAAGAGGGGAATTGGAGGTGGGCTGGAATCGTCCTCTGGGTGGAATCCATTGGGGGAATATAGTGGATATTCCTGCTATTTGAGAGAAGAAGAAGGCACACTATTAAAGAAGACTAATGGTTTGAGCTCTGATGGGAATGGTAAAGTTAAGCCGGAATTGGTCGTCGAGGCTGCAATGCTGGCGACTAATGGACAGCCATTTGAAGTCATATATTACCCTCGAGCTAGCACACCTGAATTCTGTGTGAAGGCGTCTTCTGTGAGAGCGGCAATGCTAATCCGATGGGGCTCTGGAATGAGGTTTAAAATGCCCTTTGAAACCGAGGACTCGTCGAGAATAAGCTGGTTCATGGGAACTATTTCTTCTGTCCAAGTTGCTGATCCAATTTGCTGGCCAGAGTCTCCTTGGCGTCTTCTGCAGGTTACTTGGGACGAGCCTGATTTATTACAGAACGTAAAACGTGTTAGCCCATGGCTTGTGGAGTTGGTATCAAACATGTCAGTAATCAACCTCTCCCCTTTCCCATCTCCGAGGAAAAAGCCGAGATTGCCACCTCACCCCGAATTCCCTTTCGATGCCACCCAGTTTCCGATCCCAAAATCTTTTTCCAATAACAATCACTCTGGGTCAAGTTTCCCTTTAAGTTGTCTACCCGACAAAACTTCCCCTGCTGGCATGCAGGGAGCCAGGCATGCTCTTTACAATCAATCCTTCTTGGACCTCCGCTTCAAAAAACTTCACGCCTCTCAATTCCCCATTGATTATCCACCATTCGATCACACTTCCGCCCTCCCCACTAGGACAATGATTCAAAAGCCTAGTATGATGAGTAATGAAGTCGCAGGCTTGTTGACAATGGGGTGTCTGAAAAAATCTGATGACTCGAAGCAGCCCCAACTTGTGCTTTTTGGTCAAACAATACTGACGGAACAGCAACTGTCGCAGAGCTCCGGCGAAACTGTGTCCCTAGGTATTACAGGAATTAGTTCGTCAGATGGGAATGTAGATAAAGTGGGGAATTTGTCTGATGAGTCTGTCCCGACCCTTTTCAACCTGGAAACGGGTCATTGTAAAGTATTTATGGAATCTGAAGATGTAGGCCGAACAATCGATCTCTCGTTGCTTGGTTCGTACGACGAACTTTGTAGAAAGTTGGCTGATTTGTTCGGCATAGAAAACTCGGAGACGTTAAACCACGTGCTCTATAGGGACGGTTCTGGTGCAGTCAAACACATTGGCGACGAGCCATTCAGGTTCGCATCCAAAACTCAAAAGTTTCTCATTTGA 1941 46.21 MESKEMTKEAEKCLDPQLWHACAGGMVQIPPLDTKVFYFPQGHAEHASGPVDFRSSPRLPPFIACRVSAVKFMADLETDEVYSKIKLVPLNRSELDFEEDRICGLNVAEVQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNVDPPVQNILVKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGVRRAKRGIGGGLESSSGWNPLGEYSGYSCYLREEEGTLLKKTNGLSSDGNGKVKPELVVEAAMLATNGQPFEVIYYPRASTPEFCVKASSVRAAMLIRWGSGMRFKMPFETEDSSRISWFMGTISSVQVADPICWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMSVINLSPFPSPRKKPRLPPHPEFPFDATQFPIPKSFSNNNHSGSSFPLSCLPDKTSPAGMQGARHALYNQSFLDLRFKKLHASQFPIDYPPFDHTSALPTRTMIQKPSMMSNEVAGLLTMGCLKKSDDSKQPQLVLFGQTILTEQQLSQSSGETVSLGITGISSSDGNVDKVGNLSDESVPTLFNLETGHCKVFMESEDVGRTIDLSLLGSYDELCRKLADLFGIENSETLNHVLYRDGSGAVKHIGDEPFRFASKTQKFLI 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5796813 5799179 + Bma019093.1 Bma04g00608 80977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00608 646 Gene3D - 570 646 - -
Bma04g00608 646 Gene3D - 115 219 IPR015300 -
Bma04g00608 646 ProSiteProfiles PB1 domain profile. 572 646 IPR000270 GO:0005515
Bma04g00608 646 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Bma04g00608 646 SUPERFAMILY DNA-binding pseudobarrel domain 112 219 IPR015300 -
Bma04g00608 646 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Bma04g00608 646 Gene3D - 313 387 - -
Bma04g00608 646 SMART B3_2 117 219 IPR003340 GO:0003677
Bma04g00608 646 CDD B3_DNA 116 217 IPR003340 GO:0003677
Bma04g00608 646 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bma04g00608 646 PANTHER AUXIN RESPONSE FACTOR 4 639 - -
Bma04g00608 646 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 639 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01923 Bma04g00608 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00079 Bma-Chr3:618630 Bma04g00608 Bma-Chr4:5796813 1.39E-179 dispersed
Bma04g00608 Bma-Chr4:5796813 Bma08g01153 Bma-Chr8:50555010 0 dispersed
Bma10g01134 Bma-Chr10:38033255 Bma04g00608 Bma-Chr4:5796813 1.00E-33 transposed
Bma01g01923 Bma-Chr1:71019323 Bma04g00608 Bma-Chr4:5796813 0 wgd
Bma11g00175 Bma-Chr11:1567754 Bma04g00608 Bma-Chr4:5796813 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57177 PF02362 B3 2.80E-20 CL0405 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00608 - - fve:101313821 917.916