Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00619 ATGGAGAATCATGACCCAAAGGTTGCTGAAATTTTGGATTCAATGCTGAATGATAATCAAGCATGCAGTTCAGTTGAGTTCAAGCCAAGTTCATCTATACAAACACATATAGCTTCAACAAATTCTCATCCTGAAACCCGTGATCATGATGTGGAAACTTCATCCTCTGCTTCAGCATCTAGTCGGTCAGATATAGATACTGAGAAAGATTCTTATGGGTCATGTGACTCTGATGATGCAGAGCAAAGGCAAAACCATTACAAGAATTATCAGAGAAGAAGTTGGGCTGGTGATCATGGAAGGATGAGGAGGATTGTGATGCAATTGAGTGACGAAACAGACCCTTCAGGGCAATTAGCTTTGCTCACTGAGCTATGTGAGGTTCTGTCATTTTGCACGGAAAATTCACTTTCCAGCACTATGTCGGAGTTATCAGCTCAGCTGCTTGTAAAACTTGCAAACCATGATGATAATCCTGACCTTATGTTATTTGCTATAAGGGCTATAACTTATTTATGTGATGTGCATCCTCAGTCCACCGAGTTTCTTGTTCAACATCAAGCCGTTGAAGTTCTTTGCCAAAGGTTAATAGCTATTGAGTACTTGGATGTCGCTGAGCAGTGTCTCCAAGCACTGGATAAAATATCACGGGAACAACCTCTTGTATGCTTACATGGTGGGGCGACTATGGCTGTTCTAAATTATATTGATTTCTTTTCAACGAGTGCACAAAGAGTTGCTCTTTCCACTGTGGTGAATATATGTAAAAAACTTCCTCCTGAATGTCCTTCATCTTTCGTGGAAGCTATTCCCTTATTGTGCAATCTTCTCCAGTATGAGGATGAACAGATTGTTGAAGATGTAGCTGTCTGCATAATAAAGATTTCTAAGAGAGTTAGCAAGTCCTCTGCTATACTGGAAGAATTTGGTAGACATGGGCTGATTCATCACGTCACTCGTCTATTGAACTTGAATAGCCGAAGTACTTTGTCCCCACCAGTATATACTGATTTGATTAGACTTCTTGCAGAACTTTCTTCCCGTTCGATGTTTTCTTTTGCAACTCTTTATGAGCTGAACATAAGCAATGTACTTAAGGATATGCTATCTACTTTAATTCGCTCCCAGGGAATGTATTCTTTGCACGCTGTTGATGGACAATACAATCAGGCATGTGAACTTCTAAAATTTCTTCATGAGCTCCTCCCAACATTTCTTGGAGATGAAAAGGTTCAACTAGCATCAGAAAAAGAATCTTATTTAGTAAATCATCCCGATGTTCTCCAAAATTTTGGAACAGATATATTGCCCTTGATGATTCAGGTGGTCAATTCTGGTGCAAGTATGTCTGTTTGCTATGGATGCCTAATCGTTGTTTACAACCTAGTCTACTTGAGCAAATCTGAAGTGCTTGCTGTACTGCTTAAGGATGCTAAAATTGCTAGTTTCCTAGCTGGGGCGTTCGCGCGTAAAGACCATCATGTGCTAATATTATCATTGGAAATTGCTGACATGCTTCTGCAAAAGCTTCCTGATATTTTTATGAACTCATTTATCAAAGAAGGTGTCTTCTTTGCAATCGAAGTGTTATTATCCTCAGAAAAAGGCTTGGCTCTCAAAGAGGCCATTCCCGCACATGAATCGAGTCATTTTGAAAATACAAGATGTCTGTGCTATACATTTTCTGTTAATCAATCATCTTCAGTCACAGAAACATTATGTTGTAGGCTCAAAAACAACTCTGTTCGTGATCTTGCGGAGAAAATAAGAAGTAATTATTTTGCTTCTGATATATATGATTTGGGCGGAGGAGTGACCGACATTCTCCAAATGCTCCAAACTTCATCTGTTGCACTAGACGAATTATCAAACAACACGTCAAATCAAAATGAAGATAAAGTGCATCATATATTGCTTGATCTTGTATCTAAGCTTAAGGGCTGCGAATTCATATCGACTTTTGAATTTATAGAGAGTGGAATTTTAAAAGCATTGATGAACTGCCTGTCCAATGGTCAGTATATGATGAAAAACCAACAACAGAATGATGTTTATGGGCACTATCTCGTTGTGGAAAAAAGATTTGAAGTATTTGCCAAGTTATTTCTGTCTTATTCTGATCCAACTTCTGGGGAGTTACTGTTATCGTTATTGTTAAGGAAATTACAGAATATCCTATCATCTTTGGAAAAATTTCCTGTTGTCCTTAACCAAGGTCAAGGATTTAAACAAAGAAACTGCTTTGCTGCTGTTCCAAGTGGACGTCGAATTTCATATCCATGTCTACGAGTTCGTTTTGTGAAAGGAGATGGAGAACTATACCTCTGTGACTACTCAGAAGACGTTCTGACTGTTGACCCTTTATCTTCTTTGGATGCCATTATAGAGTTTTTGTGGCCTAAAGTTAGCACAAAACGAACCAAGCACATCAGATCATCTTCGACATCTGAAGCAAGGGACCAAACAGAAAATCAACCTATTAAGTTATCGCCAATGGAAGACGAGAAGAACTTGCCCCAGTCTCCATCGGATGAACCAGTAAGTTTGACTCCTTCAAGTACGAGTGAAAGAACACATTTGGATATTTCTCCAGAGTCAAATAACAGTCTGCAATCTGAGCATCCTTCAGCTTGTAGCAATGACGATGCTTCTCCAAGACTGTTACTTTACCTTGATGGGCAGCGGTTAGACAGCTCATTGACTTTTTACCAAGCAATTCTTAAACAAAAAATAAATGAAGATGAAATATTCAATTGTACAAAATTGTTGGATCAAGTATACACATTGACATATAGAAGAGACCAAGATTCAAGAGACATTTGTTCTCCAGCATGTTGCCCTGTGTCTGTACCAGAATCGAATTCAGCATACATGCAATGTGCTTCAGCTTTTTCTAACATCTTCGATTCTGATCTTACTTCTGACTTAGAAAAGCATAGTCCTACTTATGATGTTATATTTCTGCTTAAAAGCTTGGAAGGGATGAACAGATTAACTTTTCATCTTCTGTCACATCAGAGGATACATGCTTTTGCAGAAGGGAGAAGTGATAGCTTTGATGACATGGAAATTTCAGTTCCTTCAGTATCACAGAATGAGTTTATAAGCAGTAAATTGACAGAAAAGTTAGAGCAACAGATGGGTGACTCTTTGGCGATGTCTACTGGTGGCATGCCTTCATGGTGTAATCAACTGATGGTTTCATGTCCATTTTTATTCAGTTTCGAGGCAAGACGTAAATACTTTCATTTATCAGCATTTGGTCCTCTCCAAGTTCTTAGTCACACACGTTCTAACAGTAGCCCAGGGACCCCCAGTGACAGGCGAATGAGCTCTGGTAGCTTCCCTCGTAAGAAAGTTTTAGTATTCCGCAACCGGGTTTTGGACTCTGCTTCTGAAATGATGGAGAAGCATGTTCAACATAAAGTTCTCCTTGAAGTTGAATTTAATGATGAAGTTGGCAGTGGACTTGGTCCAACACTGGAGTTTTATACTCTTATTAGTCGAGAGTTTCAAAAATCTGGCCTAGGAATGTGGAGAGAGGATCTTAGTCTGTTTAGCCCTCGACAAAGCTTGGTGGCTGAGGATGACGAAATTTCAAGGTTTCCTTTTGGTCTTTTCCCACGGCCATGGTCATCAAATTTAAATGCAACTGTTGGATTGGAGTTCAGTGAGGTGACAAAAAAATTTGTCCTCTTAGGCCAAGTTGTAGCAAGAAGTATTCAAGATGGACGGGTTTTGGATCTTTGCTTCTCCAAAGCCTTCTATAAACTTATTCTTGGGCAGGAGATCAATCTCTTTGACATCCAGTCATTTGATTCGGAGCTCGGTAGGACATTGCTCGAGTTTCAGGCTCTTGTTGAGAGGAAAAAGTTTTTGGAGTCTTCTTGTGGAGAAAATTTATCTAATGTGGACCTAAGTTATCGAAATACCAACATAGAGGATCTTTGCATAGATTTTACTCTTCCTGGTTATCCAGAATACATTCTGACTTCCGGGACTGATCATGCATTGGTAAGTATGGACACCCTGGAGGATTATATTTCCCTAACAGTGGATGCCACTATAAATACTGGAATTGCGAGACAAGTGGAAGCATTTAAATCTGGGTTTAATAAGATTTTTCCCATTGAGCATCTTCGAGCTTTTACTGCTGAGGAACTTGAGCGATTATTATGCGGAGAACAAGACTCTTGGGCTCATTCTATTGATCTTCTAGATCATATCAAGTTTGATCATGGATACACTGCAAGCAGTCCTCCCATCATTAATTTAGTGGAAATCATTCGAGAGTTCGACAATGAACAACAACGATCATTTCTTCAGTTTGTGACGGGTGCGCCTAGGCTTCCTCCCGGAGGTTTGGCATCTCTGAATCCAAAGCTAACCATTGTTCGGAAGCATTCGAGCAACCAGCCAGATTCAGATTTACCCAGTGTAATGACTTGTGCAAATTACCTCAAGCTTCCGCCTTATTCTTCCAAAGAGAGGATGAAAGAGAAGATCTTGTATGCCATTAAAGAAGGACAAGGATCATTTCATCTTTCTTAG 4551 39.53 MENHDPKVAEILDSMLNDNQACSSVEFKPSSSIQTHIASTNSHPETRDHDVETSSSASASSRSDIDTEKDSYGSCDSDDAEQRQNHYKNYQRRSWAGDHGRMRRIVMQLSDETDPSGQLALLTELCEVLSFCTENSLSSTMSELSAQLLVKLANHDDNPDLMLFAIRAITYLCDVHPQSTEFLVQHQAVEVLCQRLIAIEYLDVAEQCLQALDKISREQPLVCLHGGATMAVLNYIDFFSTSAQRVALSTVVNICKKLPPECPSSFVEAIPLLCNLLQYEDEQIVEDVAVCIIKISKRVSKSSAILEEFGRHGLIHHVTRLLNLNSRSTLSPPVYTDLIRLLAELSSRSMFSFATLYELNISNVLKDMLSTLIRSQGMYSLHAVDGQYNQACELLKFLHELLPTFLGDEKVQLASEKESYLVNHPDVLQNFGTDILPLMIQVVNSGASMSVCYGCLIVVYNLVYLSKSEVLAVLLKDAKIASFLAGAFARKDHHVLILSLEIADMLLQKLPDIFMNSFIKEGVFFAIEVLLSSEKGLALKEAIPAHESSHFENTRCLCYTFSVNQSSSVTETLCCRLKNNSVRDLAEKIRSNYFASDIYDLGGGVTDILQMLQTSSVALDELSNNTSNQNEDKVHHILLDLVSKLKGCEFISTFEFIESGILKALMNCLSNGQYMMKNQQQNDVYGHYLVVEKRFEVFAKLFLSYSDPTSGELLLSLLLRKLQNILSSLEKFPVVLNQGQGFKQRNCFAAVPSGRRISYPCLRVRFVKGDGELYLCDYSEDVLTVDPLSSLDAIIEFLWPKVSTKRTKHIRSSSTSEARDQTENQPIKLSPMEDEKNLPQSPSDEPVSLTPSSTSERTHLDISPESNNSLQSEHPSACSNDDASPRLLLYLDGQRLDSSLTFYQAILKQKINEDEIFNCTKLLDQVYTLTYRRDQDSRDICSPACCPVSVPESNSAYMQCASAFSNIFDSDLTSDLEKHSPTYDVIFLLKSLEGMNRLTFHLLSHQRIHAFAEGRSDSFDDMEISVPSVSQNEFISSKLTEKLEQQMGDSLAMSTGGMPSWCNQLMVSCPFLFSFEARRKYFHLSAFGPLQVLSHTRSNSSPGTPSDRRMSSGSFPRKKVLVFRNRVLDSASEMMEKHVQHKVLLEVEFNDEVGSGLGPTLEFYTLISREFQKSGLGMWREDLSLFSPRQSLVAEDDEISRFPFGLFPRPWSSNLNATVGLEFSEVTKKFVLLGQVVARSIQDGRVLDLCFSKAFYKLILGQEINLFDIQSFDSELGRTLLEFQALVERKKFLESSCGENLSNVDLSYRNTNIEDLCIDFTLPGYPEYILTSGTDHALVSMDTLEDYISLTVDATINTGIARQVEAFKSGFNKIFPIEHLRAFTAEELERLLCGEQDSWAHSIDLLDHIKFDHGYTASSPPIINLVEIIREFDNEQQRSFLQFVTGAPRLPPGGLASLNPKLTIVRKHSSNQPDSDLPSVMTCANYLKLPPYSSKERMKEKILYAIKEGQGSFHLS 1516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5881197 5888041 - Bma019105.1 Bma04g00619 80988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00619 1516 MobiDBLite consensus disorder prediction 26 41 - -
Bma04g00619 1516 Gene3D Hect, E3 ligase catalytic domains 1061 1292 - -
Bma04g00619 1516 SUPERFAMILY ARM repeat 102 534 IPR016024 -
Bma04g00619 1516 CDD HECTc 1119 1514 IPR000569 GO:0004842
Bma04g00619 1516 Gene3D Hect, E3 ligase catalytic domain 1402 1514 - -
Bma04g00619 1516 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL4 1 1516 - -
Bma04g00619 1516 Gene3D - 96 542 IPR011989 -
Bma04g00619 1516 MobiDBLite consensus disorder prediction 63 92 - -
Bma04g00619 1516 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 1 1516 IPR045322 GO:0006511|GO:0061630
Bma04g00619 1516 Pfam HECT-domain (ubiquitin-transferase) 1166 1516 IPR000569 GO:0004842
Bma04g00619 1516 ProSiteProfiles HECT domain profile. 1131 1516 IPR000569 GO:0004842
Bma04g00619 1516 SMART hect_3 1128 1516 IPR000569 GO:0004842
Bma04g00619 1516 MobiDBLite consensus disorder prediction 26 92 - -
Bma04g00619 1516 MobiDBLite consensus disorder prediction 841 879 - -
Bma04g00619 1516 SUPERFAMILY Hect, E3 ligase catalytic domain 1114 1509 IPR035983 GO:0004842
Bma04g00619 1516 MobiDBLite consensus disorder prediction 809 879 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma04g01608 Bma04g00619 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00607 Bma-Chr3:4996965 Bma04g00619 Bma-Chr4:5881197 1.90E-89 dispersed
Bma04g00619 Bma-Chr4:5881197 Bma08g00752 Bma-Chr8:43967032 3.56E-101 dispersed
Bma04g00619 Bma-Chr4:5881197 Bma04g01608 Bma-Chr4:52012018 6.29E-22 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00619 K10590 - qsu:112028328 1783.46