Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00620 ATGGCTGAAGCTCCGGCGAGCCCCGGTGGAGGGAGCTTCGAAAGCGGCGAACACAGCCCCCGTAATGTTCGCGAGCAGGACAGGTACCTTCCTATTGCGAATATTAGCCGAATCATGAAGAAGGCTCTCCCTGCTAATGGAAAGATCGCCAAGGATGCCAAGGAAACCGTCCAGGAATGTGTCTCGGAATTCATTAGCTTCATCACGAGCGAGGCGAGTGACAAGTGCCAAAGAGAGAAGAGAAAGACGATTAATGGTGACGATTTACTTTGGGCTATGGCAACTTTAGGGTTTGAAGATTATATTGATCCCCTTAAAATTTACCTTGGAAGATACAGAGAGGGTGATACAAAGGGGTCTGGAAAGGGTGGAGAAGGGTCAGCTAAAAAGGATGTTCAACCAGTTCCCAATACTCAGGTTGTTCACCAAGGTTCTTTCTCGCAAGGATTTAATTATGGAAATTCTCAGGCCCAGCATCTGATTTTACCAATGCATGGAACAGAATAA 507 46.94 MAEAPASPGGGSFESGEHSPRNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLGRYREGDTKGSGKGGEGSAKKDVQPVPNTQVVHQGSFSQGFNYGNSQAQHLILPMHGTE 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 5889874 5892050 - Bma019106.1 Bma04g00620 80989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00620 168 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 156 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bma04g00620 168 MobiDBLite consensus disorder prediction 1 26 - -
Bma04g00620 168 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 29 93 IPR003958 -
Bma04g00620 168 ProSitePatterns NF-YB/HAP3 subunit signature. 60 76 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bma04g00620 168 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Bma04g00620 168 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Bma04g00620 168 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Bma04g00620 168 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 156 - -
Bma04g00620 168 SUPERFAMILY Histone-fold 26 124 IPR009072 GO:0046982
Bma04g00620 168 Gene3D Histone, subunit A 17 145 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00620 Bma-Chr4:5889874 Bma08g00951 Bma-Chr8:48493663 2.17E-74 dispersed
Bma04g00620 Bma-Chr4:5889874 Bma08g00961 Bma-Chr8:48622251 2.17E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57179 PF00808 CBFD_NFYB_HMF 1.10E-27 CL0012 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00620 K08065 - csin:114259442 282.722