Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00648 GGCGAATCGGATCATACAGCTCAGTCTCCCAGCTCATCTACCTGCAACTTCAGCGGCAATATGGTAGCCTTGCCTTACACTCTCGCCGACTCCAGCTTGCGAGCCCTAGCCGGGCAGGCGGAAGGTTTTGGGCGGTTAGCCATCGGTGGTTTACACGGTCCTCTTTATCATGTCACCACCTTAGCAGATGATGGGCCGGGATCTTTACGCTACGGATGCAGGAAGAAAGAACCGTTATGGATTGTCTTTGAAATTTCAGGCACTATCAACCTCTCATCTTTCTTGAGTTTATCATCTTATAAAACCATCGATGGACGCGGCCAAAGGATAAAACTCACTGGGAAGGGTTTGAGGATTAAGGAATGTGAACATGTGATTATTTGCAATCTAGAGTTTGAAGGCGGGAAAGGTCCTGATGTTGATGCTATTCAAATTAAACCGAATTCTAAGCACATATGGATAGACCGTTGCAGCCTCAGTGGATATGCTGATGGACTGATCGATATCACCCGAGAAAGCACAGATGTTACTGTTTCTAGGTGTCACTTTTCACAGCATGACAAAACGATGCTGATTGGAGCTGATCCGTCTCACGTTAGTGATCGATGTATAAGGGTGACTATTCATCATTGTTTTTTTATATACTCTCAATGTAACATCTATGAAGCAGGACAAAAGAAGGTGGCATTTAAGTATCTCACTGAGAAGGCCGCAGACAAGGAGGAGGCAACAAGTGGCGTCGTAAAGTCGGAGGGCGACTTGTTTATTACCAATACTGAAGCGGGTTTAATGAAAGAAAATCATGGCTGTTCCGTCTTTCATCCAACTCAACATTACTCTAAATGGACGGTTGAACGGCCGAGTGAAGCTCTGAAGCTGATTCTCCAGCGTACTTCCGGGTGGCAAAATATTCCTCTGCCTCCTGATCAATCAACTGGCCACACAAAATAG 951 45.64 GESDHTAQSPSSSTCNFSGNMVALPYTLADSSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRYGCRKKEPLWIVFEISGTINLSSFLSLSSYKTIDGRGQRIKLTGKGLRIKECEHVIICNLEFEGGKGPDVDAIQIKPNSKHIWIDRCSLSGYADGLIDITRESTDVTVSRCHFSQHDKTMLIGADPSHVSDRCIRVTIHHCFFIYSQCNIYEAGQKKVAFKYLTEKAADKEEATSGVVKSEGDLFITNTEAGLMKENHGCSVFHPTQHYSKWTVERPSEALKLILQRTSGWQNIPLPPDQSTGHTK 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6245286 6247871 + Bma019140.2 Bma04g00648 81017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00648 316 Gene3D - 26 217 IPR012334 -
Bma04g00648 316 Pfam Pectate lyase 96 213 IPR002022 -
Bma04g00648 316 SMART amb_all 66 261 IPR002022 -
Bma04g00648 316 SUPERFAMILY Pectin lyase-like 37 304 IPR011050 -
Bma04g00648 316 PANTHER PECTATE LYASE 18-RELATED 22 213 IPR045032 GO:0030570
Bma04g00648 316 PANTHER PECTATE LYASE 18-RELATED 214 309 IPR045032 GO:0030570
Bma04g00648 316 PRINTS Pollen allergen Amb family signature 94 110 IPR018082 -
Bma04g00648 316 PRINTS Pollen allergen Amb family signature 39 56 IPR018082 -
Bma04g00648 316 PANTHER PECTATE LYASE 22 213 - -
Bma04g00648 316 PANTHER PECTATE LYASE 214 309 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00648 Bma-Chr4:6245286 Bma08g01130 Bma-Chr8:50205174 1.66E-147 dispersed
Bma04g00648 Bma-Chr4:6245286 Bma03g00362 Bma-Chr3:2697882 2.86E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00648 K01728 - qsu:112025472 486.108