Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g00648 | GGCGAATCGGATCATACAGCTCAGTCTCCCAGCTCATCTACCTGCAACTTCAGCGGCAATATGGTAGCCTTGCCTTACACTCTCGCCGACTCCAGCTTGCGAGCCCTAGCCGGGCAGGCGGAAGGTTTTGGGCGGTTAGCCATCGGTGGTTTACACGGTCCTCTTTATCATGTCACCACCTTAGCAGATGATGGGCCGGGATCTTTACGCTACGGATGCAGGAAGAAAGAACCGTTATGGATTGTCTTTGAAATTTCAGGCACTATCAACCTCTCATCTTTCTTGAGTTTATCATCTTATAAAACCATCGATGGACGCGGCCAAAGGATAAAACTCACTGGGAAGGGTTTGAGGATTAAGGAATGTGAACATGTGATTATTTGCAATCTAGAGTTTGAAGGCGGGAAAGGTCCTGATGTTGATGCTATTCAAATTAAACCGAATTCTAAGCACATATGGATAGACCGTTGCAGCCTCAGTGGATATGCTGATGGACTGATCGATATCACCCGAGAAAGCACAGATGTTACTGTTTCTAGGTGTCACTTTTCACAGCATGACAAAACGATGCTGATTGGAGCTGATCCGTCTCACGTTAGTGATCGATGTATAAGGGTGACTATTCATCATTGTTTTTTTATATACTCTCAATGTAACATCTATGAAGCAGGACAAAAGAAGGTGGCATTTAAGTATCTCACTGAGAAGGCCGCAGACAAGGAGGAGGCAACAAGTGGCGTCGTAAAGTCGGAGGGCGACTTGTTTATTACCAATACTGAAGCGGGTTTAATGAAAGAAAATCATGGCTGTTCCGTCTTTCATCCAACTCAACATTACTCTAAATGGACGGTTGAACGGCCGAGTGAAGCTCTGAAGCTGATTCTCCAGCGTACTTCCGGGTGGCAAAATATTCCTCTGCCTCCTGATCAATCAACTGGCCACACAAAATAG | 951 | 45.64 | GESDHTAQSPSSSTCNFSGNMVALPYTLADSSLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRYGCRKKEPLWIVFEISGTINLSSFLSLSSYKTIDGRGQRIKLTGKGLRIKECEHVIICNLEFEGGKGPDVDAIQIKPNSKHIWIDRCSLSGYADGLIDITRESTDVTVSRCHFSQHDKTMLIGADPSHVSDRCIRVTIHHCFFIYSQCNIYEAGQKKVAFKYLTEKAADKEEATSGVVKSEGDLFITNTEAGLMKENHGCSVFHPTQHYSKWTVERPSEALKLILQRTSGWQNIPLPPDQSTGHTK | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 6245286 | 6247871 | + | Bma019140.2 | Bma04g00648 | 81017 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g00648 | 316 | Gene3D | - | 26 | 217 | IPR012334 | - | |
Bma04g00648 | 316 | Pfam | Pectate lyase | 96 | 213 | IPR002022 | - | |
Bma04g00648 | 316 | SMART | amb_all | 66 | 261 | IPR002022 | - | |
Bma04g00648 | 316 | SUPERFAMILY | Pectin lyase-like | 37 | 304 | IPR011050 | - | |
Bma04g00648 | 316 | PANTHER | PECTATE LYASE 18-RELATED | 22 | 213 | IPR045032 | GO:0030570 | |
Bma04g00648 | 316 | PANTHER | PECTATE LYASE 18-RELATED | 214 | 309 | IPR045032 | GO:0030570 | |
Bma04g00648 | 316 | PRINTS | Pollen allergen Amb family signature | 94 | 110 | IPR018082 | - | |
Bma04g00648 | 316 | PRINTS | Pollen allergen Amb family signature | 39 | 56 | IPR018082 | - | |
Bma04g00648 | 316 | PANTHER | PECTATE LYASE | 22 | 213 | - | - | |
Bma04g00648 | 316 | PANTHER | PECTATE LYASE | 214 | 309 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma04g00648 | Bma-Chr4:6245286 | Bma08g01130 | Bma-Chr8:50205174 | 1.66E-147 | dispersed | |
Bma04g00648 | Bma-Chr4:6245286 | Bma03g00362 | Bma-Chr3:2697882 | 2.86E-32 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g00648 | K01728 | - | qsu:112025472 | 486.108 |