Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00716 CTTGCTTCAGACAAAGAAAACTTGTGTCTTTATGGACACCCAAATGAAGCCTGGGAAGTGACTCTTCCTGCCGAAGAGGTTCCACCGGAGCTTCCAGAGCCAGTGCTTGGAATAAATTTTGCTAGAGATGGGATGAACCGCAAAGACTGGATTTCTTTAGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTAGCTTTCTATCTCGGCGCCCGTCTTAACCGTAATGAAAGGAAGCGTCTGTTTAGCTTGATCAATGATTTACCGACGGTCTTTGAAGTTGTGACTGAGAGAAACCCTGTTGAAGATAACCCCAGTGTGGACAGTGGAAGCAAATCTCGATCAAGCACAAAGCTATTATTTTTGGGTTTGCAATTAAAGTTTTCTCGTGTATGCATTACCCAAAGTTCCTGCCTTCCGCAGAGATCAAATGATGGTCAAGTGAAAAGCAACCCCAAAGCTGCTGAAGAAAATTACGAAGAAGTTGAAGACGAACTGAATGAAACCCTCTGTGGGAGCTGTGGCGGTAACTACAGTGCAGATGAGTTTTGGATAGGCTGCGACATATGCGAAAGGTGGTTTCATGGGAAGTGTGTAAAGATAACACCTTCTAAGGCTGAGAATATAAAGCAATACAAGTGCCCATCTTGCAGCTTGAAGAAAGGTAGACAGTAA 675 44.0 LASDKENLCLYGHPNEAWEVTLPAEEVPPELPEPVLGINFARDGMNRKDWISLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERNPVEDNPSVDSGSKSRSSTKLLFLGLQLKFSRVCITQSSCLPQRSNDGQVKSNPKAAEENYEEVEDELNETLCGSCGGNYSADEFWIGCDICERWFHGKCVKITPSKAENIKQYKCPSCSLKKGRQ 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7308242 7309885 + Bma019218.1 Bma04g00716 81085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00716 224 Pfam Alfin 4 96 IPR021998 GO:0006355|GO:0042393
Bma04g00716 224 PANTHER CPG BINDING PROTEIN 138 223 IPR045104 GO:0006355|GO:0042393
Bma04g00716 224 PANTHER CPG BINDING PROTEIN 4 119 IPR045104 GO:0006355|GO:0042393
Bma04g00716 224 CDD PHD_AL_plant 170 220 IPR044104 -
Bma04g00716 224 SUPERFAMILY FYVE/PHD zinc finger 159 222 IPR011011 -
Bma04g00716 224 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 138 223 - -
Bma04g00716 224 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 4 119 - -
Bma04g00716 224 ProSitePatterns Zinc finger PHD-type signature. 171 217 IPR019786 -
Bma04g00716 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 218 IPR013083 -
Bma04g00716 224 ProSiteProfiles Zinc finger PHD-type profile. 168 220 IPR019787 -
Bma04g00716 224 Pfam PHD-finger 171 218 IPR019787 -
Bma04g00716 224 SMART PHD_3 170 218 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00716 - - - zju:107430855 362.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01801 Bma-Chr1:63399518 Bma04g00716 Bma-Chr4:7308242 4.06E-116 dispersed
Bma04g00716 Bma-Chr4:7308242 Bma06g00890 Bma-Chr6:43804599 3.44E-68 dispersed
Bma11g00599 Bma-Chr11:8956353 Bma04g00716 Bma-Chr4:7308242 3.50E-50 dispersed
Bma04g00716 Bma-Chr4:7308242 Bma08g01024 Bma-Chr8:49360028 2.49E-104 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma12g00038 . 1 236 Alfin-like Transcription Factor Family AT1G14510 83.9 3.4e-101 364.8
Bma02g00545 CCT,ECH 1 247 Alfin-like Transcription Factor Family AT1G14510 68.3 2.1e-95 345.5
Bma01g00252 CCT 1 220 Alfin-like Transcription Factor Family AT1G14510 69.8 7.9e-90 327.0
Bma06g00890 . 1 250 Alfin-like Transcription Factor Family AT1G14510 68.4 6.9e-86 313.9
Bma08g01024 . 8 238 Alfin-like Transcription Factor Family AT1G14510 60.0 1.6e-79 292.7
Bma01g02201 CCT,ECH 1 237 Alfin-like Transcription Factor Family AT1G14510 56.0 2.2e-76 282.3
Bma01g01743 . 7 236 Alfin-like Transcription Factor Family AT1G14510 57.1 7.1e-75 277.3
Bma05g00910 . 1 166 Alfin-like Transcription Factor Family AT1G14510 78.9 2.0e-64 242.7
Bma04g00716 . 4 221 Alfin-like Transcription Factor Family AT1G14510 56.6 1.5e-61 233.0
Bma01g01801 . 1 201 Alfin-like Transcription Factor Family AT1G14510 57.5 5.0e-60 228.0
Bma02g00545 CCT,ECH 1 250 Alfin-like Transcription Factor Family AT5G26210 71.0 2.5e-104 375.2
Bma06g00890 . 1 252 Alfin-like Transcription Factor Family AT5G26210 79.5 1.0e-100 363.2
Bma01g00252 CCT 1 222 Alfin-like Transcription Factor Family AT5G26210 73.6 2.0e-96 349.0
Bma01g02201 CCT,ECH 1 239 Alfin-like Transcription Factor Family AT5G26210 61.8 2.0e-85 312.4
Bma08g01024 . 7 240 Alfin-like Transcription Factor Family AT5G26210 57.9 4.0e-81 298.1
Bma01g01743 . 4 238 Alfin-like Transcription Factor Family AT5G26210 58.6 2.0e-80 295.8
Bma12g00038 . 9 236 Alfin-like Transcription Factor Family AT5G26210 70.0 5.4e-78 287.7
Bma04g00716 . 4 223 Alfin-like Transcription Factor Family AT5G26210 55.1 1.7e-63 239.6
Bma01g01801 . 1 203 Alfin-like Transcription Factor Family AT5G26210 57.8 3.7e-63 238.4
Bma11g00599 CCT 1 210 Alfin-like Transcription Factor Family AT5G26210 51.2 1.0e-60 230.3
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT5G26210 65.9 3.0e-52 202.2
Bma01g00252 CCT 3 222 Alfin-like Transcription Factor Family AT3G42790 76.0 2.0e-98 355.5
Bma02g00545 CCT,ECH 3 250 Alfin-like Transcription Factor Family AT3G42790 68.3 1.2e-95 346.3
Bma06g00890 . 3 252 Alfin-like Transcription Factor Family AT3G42790 78.0 6.2e-95 344.0
Bma08g01024 . 7 240 Alfin-like Transcription Factor Family AT3G42790 58.5 7.3e-80 293.9
Bma01g02201 CCT,ECH 1 239 Alfin-like Transcription Factor Family AT3G42790 58.2 1.2e-79 293.1
Bma01g01743 . 6 238 Alfin-like Transcription Factor Family AT3G42790 56.4 7.6e-77 283.9
Bma12g00038 . 9 236 Alfin-like Transcription Factor Family AT3G42790 67.5 4.9e-76 281.2
Bma04g00716 . 4 223 Alfin-like Transcription Factor Family AT3G42790 52.9 2.6e-61 232.3
Bma01g01801 . 1 203 Alfin-like Transcription Factor Family AT3G42790 55.1 3.4e-61 231.9
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT3G42790 61.3 3.9e-49 191.8
Bma08g01024 . 1 240 Alfin-like Transcription Factor Family AT5G05610 79.7 5.7e-114 407.1
Bma01g01743 . 4 239 Alfin-like Transcription Factor Family AT5G05610 74.3 1.6e-103 372.5
Bma02g00545 CCT,ECH 8 249 Alfin-like Transcription Factor Family AT5G05610 66.4 5.8e-90 327.4
Bma04g00716 . 4 224 Alfin-like Transcription Factor Family AT5G05610 68.9 8.6e-86 313.5
Bma01g01801 . 1 204 Alfin-like Transcription Factor Family AT5G05610 73.7 2.8e-84 308.5
Bma01g00252 CCT 4 222 Alfin-like Transcription Factor Family AT5G05610 60.0 3.1e-83 305.1
Bma06g00890 . 4 252 Alfin-like Transcription Factor Family AT5G05610 57.6 3.2e-80 295.0
Bma01g02201 CCT,ECH 6 240 Alfin-like Transcription Factor Family AT5G05610 55.2 1.1e-72 270.0
Bma12g00038 . 9 236 Alfin-like Transcription Factor Family AT5G05610 61.1 4.6e-71 264.6
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT5G05610 59.4 1.8e-46 183.0
Bma08g01024 . 43 240 Alfin-like Transcription Factor Family AT3G11200 82.1 2.0e-95 345.5
Bma01g01743 . 42 239 Alfin-like Transcription Factor Family AT3G11200 76.2 2.4e-85 312.0
Bma04g00716 . 4 224 Alfin-like Transcription Factor Family AT3G11200 69.3 1.2e-84 309.7
Bma01g01801 . 1 204 Alfin-like Transcription Factor Family AT3G11200 74.0 3.0e-83 305.1
Bma02g00545 CCT,ECH 44 249 Alfin-like Transcription Factor Family AT3G11200 62.6 8.9e-72 266.9
Bma01g00252 CCT 44 222 Alfin-like Transcription Factor Family AT3G11200 61.1 1.6e-68 256.1
Bma06g00890 . 44 252 Alfin-like Transcription Factor Family AT3G11200 60.3 1.2e-65 246.5
Bma12g00038 . 52 236 Alfin-like Transcription Factor Family AT3G11200 63.2 3.0e-59 225.3
Bma01g02201 CCT,ECH 44 240 Alfin-like Transcription Factor Family AT3G11200 53.5 2.1e-57 219.2
Bma05g00910 . 1 168 Alfin-like Transcription Factor Family AT3G11200 57.7 6.4e-46 181.0
Bma11g00599 CCT 34 210 Alfin-like Transcription Factor Family AT3G11200 52.0 4.6e-44 174.9
Bma12g00038 . 1 169 Alfin-like Transcription Factor Family AT2G02470 82.2 7.2e-75 277.3
Bma01g00252 CCT 1 146 Alfin-like Transcription Factor Family AT2G02470 78.8 5.7e-64 241.1
Bma06g00890 . 1 155 Alfin-like Transcription Factor Family AT2G02470 74.8 1.1e-62 236.9
Bma02g00545 CCT,ECH 1 158 Alfin-like Transcription Factor Family AT2G02470 74.1 1.4e-62 236.5
Bma08g01024 . 8 153 Alfin-like Transcription Factor Family AT2G02470 67.8 3.2e-54 208.8
Bma01g02201 CCT,ECH 1 145 Alfin-like Transcription Factor Family AT2G02470 66.2 5.6e-51 198.0
Bma01g01743 . 7 154 Alfin-like Transcription Factor Family AT2G02470 63.6 8.1e-50 194.1
Bma04g00716 . 4 116 Alfin-like Transcription Factor Family AT2G02470 69.8 2.2e-39 159.5
Bma06g00890 . 3 153 Alfin-like Transcription Factor Family AT5G20510 79.5 5.8e-69 257.3
Bma02g00545 CCT,ECH 3 164 Alfin-like Transcription Factor Family AT5G20510 72.2 7.1e-67 250.4
Bma01g00252 CCT 3 139 Alfin-like Transcription Factor Family AT5G20510 81.0 3.0e-65 245.0
Bma12g00038 . 3 173 Alfin-like Transcription Factor Family AT5G20510 69.9 1.6e-63 239.2
Bma08g01024 . 7 172 Alfin-like Transcription Factor Family AT5G20510 59.5 1.3e-52 203.0
Bma01g01743 . 6 144 Alfin-like Transcription Factor Family AT5G20510 65.0 1.9e-51 199.1
Bma01g02201 CCT,ECH 1 164 Alfin-like Transcription Factor Family AT5G20510 61.2 3.2e-51 198.4
Bma04g00716 . 4 131 Alfin-like Transcription Factor Family AT5G20510 59.0 5.3e-38 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57186 PF12165 Alfin 3.30E-50 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00716 Bma_Chr04 FPKM 8.883428 9.516351 14.977913 16.548677 14.00093 12.863023 14.185542 18.156944 17.301085 16.626041