Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma04g00716 | CTTGCTTCAGACAAAGAAAACTTGTGTCTTTATGGACACCCAAATGAAGCCTGGGAAGTGACTCTTCCTGCCGAAGAGGTTCCACCGGAGCTTCCAGAGCCAGTGCTTGGAATAAATTTTGCTAGAGATGGGATGAACCGCAAAGACTGGATTTCTTTAGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTAGCTTTCTATCTCGGCGCCCGTCTTAACCGTAATGAAAGGAAGCGTCTGTTTAGCTTGATCAATGATTTACCGACGGTCTTTGAAGTTGTGACTGAGAGAAACCCTGTTGAAGATAACCCCAGTGTGGACAGTGGAAGCAAATCTCGATCAAGCACAAAGCTATTATTTTTGGGTTTGCAATTAAAGTTTTCTCGTGTATGCATTACCCAAAGTTCCTGCCTTCCGCAGAGATCAAATGATGGTCAAGTGAAAAGCAACCCCAAAGCTGCTGAAGAAAATTACGAAGAAGTTGAAGACGAACTGAATGAAACCCTCTGTGGGAGCTGTGGCGGTAACTACAGTGCAGATGAGTTTTGGATAGGCTGCGACATATGCGAAAGGTGGTTTCATGGGAAGTGTGTAAAGATAACACCTTCTAAGGCTGAGAATATAAAGCAATACAAGTGCCCATCTTGCAGCTTGAAGAAAGGTAGACAGTAA | 675 | 44.0 | LASDKENLCLYGHPNEAWEVTLPAEEVPPELPEPVLGINFARDGMNRKDWISLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERNPVEDNPSVDSGSKSRSSTKLLFLGLQLKFSRVCITQSSCLPQRSNDGQVKSNPKAAEENYEEVEDELNETLCGSCGGNYSADEFWIGCDICERWFHGKCVKITPSKAENIKQYKCPSCSLKKGRQ | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 7308242 | 7309885 | + | Bma019218.1 | Bma04g00716 | 81085 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma04g00716 | 224 | Pfam | Alfin | 4 | 96 | IPR021998 | GO:0006355|GO:0042393 | |
Bma04g00716 | 224 | PANTHER | CPG BINDING PROTEIN | 138 | 223 | IPR045104 | GO:0006355|GO:0042393 | |
Bma04g00716 | 224 | PANTHER | CPG BINDING PROTEIN | 4 | 119 | IPR045104 | GO:0006355|GO:0042393 | |
Bma04g00716 | 224 | CDD | PHD_AL_plant | 170 | 220 | IPR044104 | - | |
Bma04g00716 | 224 | SUPERFAMILY | FYVE/PHD zinc finger | 159 | 222 | IPR011011 | - | |
Bma04g00716 | 224 | PANTHER | ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED | 138 | 223 | - | - | |
Bma04g00716 | 224 | PANTHER | ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED | 4 | 119 | - | - | |
Bma04g00716 | 224 | ProSitePatterns | Zinc finger PHD-type signature. | 171 | 217 | IPR019786 | - | |
Bma04g00716 | 224 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 161 | 218 | IPR013083 | - | |
Bma04g00716 | 224 | ProSiteProfiles | Zinc finger PHD-type profile. | 168 | 220 | IPR019787 | - | |
Bma04g00716 | 224 | Pfam | PHD-finger | 171 | 218 | IPR019787 | - | |
Bma04g00716 | 224 | SMART | PHD_3 | 170 | 218 | IPR001965 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01801 | Bma-Chr1:63399518 | Bma04g00716 | Bma-Chr4:7308242 | 4.06E-116 | dispersed | |
Bma04g00716 | Bma-Chr4:7308242 | Bma06g00890 | Bma-Chr6:43804599 | 3.44E-68 | dispersed | |
Bma11g00599 | Bma-Chr11:8956353 | Bma04g00716 | Bma-Chr4:7308242 | 3.50E-50 | dispersed | |
Bma04g00716 | Bma-Chr4:7308242 | Bma08g01024 | Bma-Chr8:49360028 | 2.49E-104 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57186 | PF12165 | Alfin | 3.30E-50 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma04g00716 | - | - | zju:107430855 | 362.459 |