Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00716 CTTGCTTCAGACAAAGAAAACTTGTGTCTTTATGGACACCCAAATGAAGCCTGGGAAGTGACTCTTCCTGCCGAAGAGGTTCCACCGGAGCTTCCAGAGCCAGTGCTTGGAATAAATTTTGCTAGAGATGGGATGAACCGCAAAGACTGGATTTCTTTAGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTAGCTTTCTATCTCGGCGCCCGTCTTAACCGTAATGAAAGGAAGCGTCTGTTTAGCTTGATCAATGATTTACCGACGGTCTTTGAAGTTGTGACTGAGAGAAACCCTGTTGAAGATAACCCCAGTGTGGACAGTGGAAGCAAATCTCGATCAAGCACAAAGCTATTATTTTTGGGTTTGCAATTAAAGTTTTCTCGTGTATGCATTACCCAAAGTTCCTGCCTTCCGCAGAGATCAAATGATGGTCAAGTGAAAAGCAACCCCAAAGCTGCTGAAGAAAATTACGAAGAAGTTGAAGACGAACTGAATGAAACCCTCTGTGGGAGCTGTGGCGGTAACTACAGTGCAGATGAGTTTTGGATAGGCTGCGACATATGCGAAAGGTGGTTTCATGGGAAGTGTGTAAAGATAACACCTTCTAAGGCTGAGAATATAAAGCAATACAAGTGCCCATCTTGCAGCTTGAAGAAAGGTAGACAGTAA 675 44.0 LASDKENLCLYGHPNEAWEVTLPAEEVPPELPEPVLGINFARDGMNRKDWISLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERNPVEDNPSVDSGSKSRSSTKLLFLGLQLKFSRVCITQSSCLPQRSNDGQVKSNPKAAEENYEEVEDELNETLCGSCGGNYSADEFWIGCDICERWFHGKCVKITPSKAENIKQYKCPSCSLKKGRQ 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7308242 7309885 + Bma019218.1 Bma04g00716 81085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00716 224 Pfam Alfin 4 96 IPR021998 GO:0006355|GO:0042393
Bma04g00716 224 PANTHER CPG BINDING PROTEIN 138 223 IPR045104 GO:0006355|GO:0042393
Bma04g00716 224 PANTHER CPG BINDING PROTEIN 4 119 IPR045104 GO:0006355|GO:0042393
Bma04g00716 224 CDD PHD_AL_plant 170 220 IPR044104 -
Bma04g00716 224 SUPERFAMILY FYVE/PHD zinc finger 159 222 IPR011011 -
Bma04g00716 224 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 138 223 - -
Bma04g00716 224 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 4 119 - -
Bma04g00716 224 ProSitePatterns Zinc finger PHD-type signature. 171 217 IPR019786 -
Bma04g00716 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 218 IPR013083 -
Bma04g00716 224 ProSiteProfiles Zinc finger PHD-type profile. 168 220 IPR019787 -
Bma04g00716 224 Pfam PHD-finger 171 218 IPR019787 -
Bma04g00716 224 SMART PHD_3 170 218 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01801 Bma-Chr1:63399518 Bma04g00716 Bma-Chr4:7308242 4.06E-116 dispersed
Bma04g00716 Bma-Chr4:7308242 Bma06g00890 Bma-Chr6:43804599 3.44E-68 dispersed
Bma11g00599 Bma-Chr11:8956353 Bma04g00716 Bma-Chr4:7308242 3.50E-50 dispersed
Bma04g00716 Bma-Chr4:7308242 Bma08g01024 Bma-Chr8:49360028 2.49E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57186 PF12165 Alfin 3.30E-50 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00716 - - zju:107430855 362.459