Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00728 ATGAAATTTGCAGTAGATGAGGTTGAGTTTGCAATTGATAAGCTTGGTGAAGATAGCCCTCTTAATGAATTGGTAGACTTCATCATTGCTGCACAAATAGCTGGAAAACTGGAGAAGGAAGATGATACAGTTTATGTGTATGAAGACAAAAAAGAGGATGTCAACAATGAAACCCTGTTCGGGACTATGGATAAAACTTTGCGGTTGCTAGAGATGGGTTTCACTGAAAATGATGTTTCTTTAGCAATTGAAAAGTTTGGTTCGGAGATTGCAATTTCTGAGCTGGCCGCCTCTATTGTTGAAGGTCGAATTGCTGGTAACTTTTTTATCTCAAAGATATTTAGTGGAAGTAGCTCCCATTCTGTTAATGGATCTAGTCCTTTTGGTACGGAAGTGAAAACTGAGGATTTTGGTTCGGATGCAGTTTATCAACAGGTTAGCAGGGATGAAACCATTAAAGGAAAAAGACCAAAACAAGAATCTATGGATGACCATTGCAATGGTATTTTTCGTTTCGTTAGAAATCACGAGGATAGCATGCCAAAAGAAGAGAACACGGATGAAATTTCAGATTCTCTTTATCATTTGGGACAAAACCAGAAGGGAAAAAGGCCAAAACTTGATCATGCTGTCAACAGAAGCTTTTTACCCGATCCCACATGGCAAGAAGAAAAATTTGAACCTTCCGAATTGGGAATGCCCATGCCCAAACCTCCCCAGTCGAATCTGAGTAAACGTGTGGATAAAATCTTAGCTAAACCTCCATTTTTCTTCTATGGCAATACACATAACATATCTAAGGACTCGTGGGTGAAAATATCACAGTTCATGTATGGCCTTGAGCCGGAATTTGCGAATACTCAGTATTTCACGGCCTTGAATAGAAAGGAAGGGTACGTCCACAATCTTCCCACCGCAAACAGATTTCACATTCTTCCAAAATCTGCACTGACCATTCAAGAGGTAATACCACAGACGAAAAAATGGTGGCCTTCATGGGATATGAGAAAGCAGTTGAACTGCATCAGCTCCGAAACAACTGGAATATCTCAGCTCTGTGATAAGCTTGGAAAGTTGCTAACTGATTGTCAGGGATACCCGTCGGCTGAACAACAAGGAAACATCCTCTGCCATTGTCAAACATTGAATCTTGTCTGGACTGGAAAGAATAGGTTAAGTCCAATCGAGCCTCGACATTTGGAGAGTATACTCGGCTATCCAATTGATCACACCCAACTTGGGGAGAGTGGCCTATTGGAAAGACTTAAGCTGCTGAAACACTCTTTTCAGACAGACACTTTAGGGTACTATCTCTCGACATTGAAGTCTATTTTTCCAGAAGGATTGACGGTACTGTCAGTATTCAGCGAAATTGGCGGGGTGGAAGTTGCCTTACACCGGCTTGGGATTCCTATGAAAGGGGTAGTCTCAGTGGAAACTTCACAAATGAAGAGGAGGATTCTCCAGAAGTGGTGGCATAAGACTAAACAGCCTGGGGAGTTGCTGCAGATAGAAGATATTCAAAAATTAACAAGTAGCAAGATTGAGGGCTTGATAAAGAAATTTGGTGGGTTTGATTTGGTTATTTGTCAGAGTTCTTGTTCAAACAGGACAAGCTCCAAACCTGCCGCGGGAGATGAAAGTGTGTCTGGTTTTGACTTTTCCATATTTTACGAGTTTGCTCGTGTAATGCAACGGGTGAGGAGCATAATGAGAAGAAAGAAGTGA 1728 41.44 MKFAVDEVEFAIDKLGEDSPLNELVDFIIAAQIAGKLEKEDDTVYVYEDKKEDVNNETLFGTMDKTLRLLEMGFTENDVSLAIEKFGSEIAISELAASIVEGRIAGNFFISKIFSGSSSHSVNGSSPFGTEVKTEDFGSDAVYQQVSRDETIKGKRPKQESMDDHCNGIFRFVRNHEDSMPKEENTDEISDSLYHLGQNQKGKRPKLDHAVNRSFLPDPTWQEEKFEPSELGMPMPKPPQSNLSKRVDKILAKPPFFFYGNTHNISKDSWVKISQFMYGLEPEFANTQYFTALNRKEGYVHNLPTANRFHILPKSALTIQEVIPQTKKWWPSWDMRKQLNCISSETTGISQLCDKLGKLLTDCQGYPSAEQQGNILCHCQTLNLVWTGKNRLSPIEPRHLESILGYPIDHTQLGESGLLERLKLLKHSFQTDTLGYYLSTLKSIFPEGLTVLSVFSEIGGVEVALHRLGIPMKGVVSVETSQMKRRILQKWWHKTKQPGELLQIEDIQKLTSSKIEGLIKKFGGFDLVICQSSCSNRTSSKPAAGDESVSGFDFSIFYEFARVMQRVRSIMRRKK 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7605934 7609161 - Bma019236.1 Bma04g00728 81097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00728 575 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 247 430 IPR029063 -
Bma04g00728 575 PANTHER DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED 1 573 - -
Bma04g00728 575 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 447 564 IPR029063 -
Bma04g00728 575 Gene3D Vaccinia Virus protein VP39 440 575 IPR029063 -
Bma04g00728 575 PANTHER INACTIVE DNA (CYTOSINE-5)-METHYLTRANSFERASE DRM3-RELATED 1 573 - -
Bma04g00728 575 ProSiteProfiles SAM-dependent methyltransferase DRM-type domain profile. 243 574 IPR030380 GO:0006306
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00728 - - - jre:109001172 652.129
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00362 Bma-Chr2:5799699 Bma04g00728 Bma-Chr4:7605934 4.30E-100 dispersed
Bma04g00728 Bma-Chr4:7605934 Bma15g00840 Bma-Chr15:21230417 9.21E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g226 . Blo12g00378 Bda03g00829 . Bpe04g00786 . Bma04g00728 . . . . . . . . . . . . . . . . . Cla06g00401 Cam06g0423 Cec06g0430 Cco06g0430 Clacu06g0409 Cmu06g0409 Cre06g1189 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01980 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006515 1 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00728 Bma_Chr04 FPKM 2.262023 3.963187 2.225904 2.642879 1.673649 1.491037 1.105487 4.76165 3.813642 4.394202