Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00729 AAAATGCCCGGCCTCACCATCGGAGATACGGTGCCTGACATTGAAGCCGACAGCACCCACGGCAAGATTAAGCTCTACGACTTCGTCGGAGATAGTTGGGCCATCATCTTCTCCCATCCTGCTGACTTCACGCCGGTCTGTACGACGGAGCTGGGCCAGATGGCTGCTTATGCCGACAGATTCAATCATCTGGGTGTAAAGTTGCTGGGTATATCTTGTGACGATGTTCCTTCACACACAGAGTGGATCAAAGACATTGAAGCTTACACGAAAGGGTGCAAAGTGACCTACCCTATCCTCGCAGATCCTAAGAGGGAGATCATCAAACAACTCAACATGTTAGACCCCGACCTGAAAGACTCCGCCGGAAACAACCTCCCGTCACGAGCTCTCCACATCGTCGGCCCCGATAAAAAGGTGAAGTTGAGCTTTCTTTACCCAGGAACCACTGGCCGCAACATGGACGAAGTAATTAGGGTTCTGGAGTCGCTACAGAAGGCGTCAAAGCAGAAGATCGCCACTCCGGCCAACTGGAAATCAGGAGATCCAGTAGTGATATCGCCTTCTGTGTCGAATGAGGAAGCCAAAAAGAGTTTCCCTCAGGGTTACAAGACTGTCGACCTTCCGTCTAAGAAGGATTACATGCGTTTCACTAACATGTAA 663 50.53 KMPGLTIGDTVPDIEADSTHGKIKLYDFVGDSWAIIFSHPADFTPVCTTELGQMAAYADRFNHLGVKLLGISCDDVPSHTEWIKDIEAYTKGCKVTYPILADPKREIIKQLNMLDPDLKDSAGNNLPSRALHIVGPDKKVKLSFLYPGTTGRNMDEVIRVLESLQKASKQKIATPANWKSGDPVVISPSVSNEEAKKSFPQGYKTVDLPSKKDYMRFTNM 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7620406 7621268 + Bma019237.1 Bma04g00729 81098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00729 220 PANTHER MCG48959-RELATED 2 219 - -
Bma04g00729 220 CDD PRX_1cys 7 218 IPR045020 GO:0051920|GO:0098869
Bma04g00729 220 Pfam AhpC/TSA family 7 141 IPR000866 GO:0016209|GO:0016491
Bma04g00729 220 ProSiteProfiles Thioredoxin domain profile. 5 166 IPR013766 -
Bma04g00729 220 Gene3D Antioxidant, Horf6; Chain A, domain2 153 220 - -
Bma04g00729 220 PIRSF AHPC 1 220 IPR024706 -
Bma04g00729 220 PANTHER MCG48959-RELATED 2 219 - -
Bma04g00729 220 Gene3D Glutaredoxin 3 152 - -
Bma04g00729 220 SUPERFAMILY Thioredoxin-like 5 219 IPR036249 -
Bma04g00729 220 Pfam C-terminal domain of 1-Cys peroxiredoxin 163 202 IPR019479 GO:0051920
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00729 K11188 PRDX6; peroxiredoxin 6 [EC:1.11.1.7 1.11.1.27 3.1.1.-] - qsu:111986967 385.571
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00536 Bma-Chr4:4704717 Bma04g00729 Bma-Chr4:7620406 6.21E-17 dispersed
Bma04g00729 Bma-Chr4:7620406 Bma06g01008 Bma-Chr6:46610059 1.17E-08 dispersed
Bma04g00729 Bma-Chr4:7620406 Bma01g01998 Bma-Chr1:74210167 7.18E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g241 . . Bda03g00830 . Bpe04g01136 . Bma04g00729 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g01396 . . Cme06g00822 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014291 1 1 0 1 1 1 0 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 0 0 0 1 1 0 1 1 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00729 Bma_Chr04 FPKM 172.321625 185.035126 170.944305 177.713028 215.46138 209.095352 212.854767 180.862518 184.077164 181.097305