Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00738 ATGGCGTCTGCAACAGTCAACGGAACGACAGTCTGCCCGGCTCCGATGAAGGCGACGTCGAATGGATCGTTTCAGGGGGATAATCCTCTCGATTATGCTCTTCCTCTGGCCATCCTCCAGATCTGTCTGGTGGTGGCTTTTACCAGATCCCTCGCTTTGATCCTCAGGCCCCTCAGGCAGCCCAGAGTTATTGCTGAGATCATTGGAGGAATACTGCTTGGCCCTTCTGCTCTTGGACGAAACAAGAAATTTCTTCACACCGTCTTCCCAGCAAGAAGCATGACTGTGTTGGACACACTAGCTAGCATTGGCCTTCTCTTCTTCCTGTTTCTCGTCGGACTGGAGCTCGACATGCGGGCCCTCCGTCGCACCGGCACCAAGGCTCTCGGAATAGCACTCGCCGGCATCAGTCTCCCCTTCGTCCTTGGCATCGGCACCTCCTTTGTCCTTCGAGCGACGATATCTACCGGAGTGAAGGAAGGCCCATTTCTCGTCTTCATGGGGGTCTCCTTGTCGATAACGGCCTTCCCTGTTCTCGCTCGAATCCTAGCCGAGCTTAAACTTCTGACTACAGATGTCGGGCGGATTGCGATGTCTGCAGCCGCCGTAAATGACGTCGCCGCTTGGATTTTGCTCGCGCTCGCCATTGCTCTTTCCGGCAACGAAACGTCTCCTCTAGTTTCCATATGGGTTCTGCTATGCGGGGTGGGTTTCATTGTCTTCGTCGTCGTGGTATTAAGACCGGGACTCGCGCTAATGGCCCGGCGGTCCCCTCAGGGTGAGCCGGTGAAGGAGCTCTACATATGCATCACCTTGTCGTTGGTTTTGGCAGCCAGTTTCGTCACCGATGCGATTGGAATACATGCGCTTTTCGGCGCTTTCGTCATCGGCATAGTGGTGCCCAAGGACGGGGCGTTTGCAGGGGTGCTTATAGAAAAGATAGAGGATCTGGTTTCTGGTCTTCTTCTTCCTCTTTACTTCGTCTCGAGCGGGCTGAAGACGAACGTTGCGACGATAAGCGGTGGGCTTTCTTGGGGCCTGCTTGCGATTGTCATTTTCACAGCTTGCTTTGGGAAGATTGTTGGGACTTTGACAGTTTCGATGTTGTTCAAAGTTCCTTTCAGAGAAGCTCTGGCTCTTGGGTTCCTTATGAACACTAAAGGGCTAGTGGAGCTCATCGTCCTCAATATTGGCAAGGACAGAAAGGTATTGAACGACCAAACCTTTGCTATTTTAGTGCTAATGGCGTTGTTTACAACTTTCATGACAACCCCACTAGTTATGGCGGTGTACAAGCCTGCCAGAAAAGGATCACCGTACAAGCACCGAACCATCCGAAGAAAAGACCGCGAATCCGAGCTTCGAATACTAGCCTGCTTCCATAGCACTCGAAACATCCCCACCATGATCAACCTGATCGAGTGCTCTCGCGGGATTCGAAAAAGAGGCCGTCTTTGCATCTACGCTTTGCATCTCATGGAGCTCTCGGAGCGATCTTCCGCCATTTCCATGGTCCACAAGGCCAGAAACAACGGTCTACCGTTCTGGAACAAGAAGAGAGACGACAGAGATGAGATGATCATCGCGTTCGAGGCGTATCAGCAACTCAGCAGCGTTACCGTCCGTCCGATGACTGCAATTTCGTCTCTGAACAACATGCACGAGGATATTTGTACGAGTGCACACCAAAAACGGGCGGCCATAATTCTGATTCCTTTCCATAAACATCAGAGAGTAGATGGGGCGATGGAGTCTCTCGGCCATTCCTTCCACACGGTGAACCAACGGGTTCTCCTTCACGCCCCTTGCAGTGTCGGAATTTTAATCGACAGAGGGCTTGGCGGGACCACCCAAGTGTCGGCTAGCGATGTATCGTACAGTATCGTCGTGCCGTTTTTCGGCGGAGGGGACGACCGGGAAGCACTTGCCTTCGGTTTGAGGATGGCCGAACACCCGGGAATAGAGCTGAAGGTGGTGAAGTTTGTTGGGTCGCTGACGGGAAACGTCAACGAGGAAGCGGCGGAGGACGAAACCAGCATCTCTGAATTTTTGGGTTGCACGGAAAAGGAAGATTCAATGTCATACGAAGAAAGAAAGATCGAAAGCAAAACAGACATAGTGGAAGCGTTGAAGTCGTTAAACAAGTTCAATCTGTTTTTGGTCGGACGAGCAACAATGTCAGGCACGCCATTGACGAACCGGAGCGACTGCCCGGAGCTGGGGACAGTGGGGAGCTTCCTAGCGTCGTCGGAATTTTCAACGACGGCGTCGGTTGTGGTGGTTCAGGAGTACAATGCTTTGAAGAACACAAGACCACTGGTGGAGGAAGAGGCGGATGGGTACGTAAATGAAGTACCAGACACACCGGCGGCTACAAATTTTGCGGCGGAGAGAAAGCATATAACCACTGTGCAATCTATTATCAAGAACTGCGTCTTGCAATTGAATTTTGAGACTGCAAAAGTGTTGACTTTGAAATTTTTTTTGCGCTCAAATGATTGGAATCGGAGCTTGAAGGATCATAATTCGAAATATTTGCATATAATATAA 2550 51.22 MASATVNGTTVCPAPMKATSNGSFQGDNPLDYALPLAILQICLVVAFTRSLALILRPLRQPRVIAEIIGGILLGPSALGRNKKFLHTVFPARSMTVLDTLASIGLLFFLFLVGLELDMRALRRTGTKALGIALAGISLPFVLGIGTSFVLRATISTGVKEGPFLVFMGVSLSITAFPVLARILAELKLLTTDVGRIAMSAAAVNDVAAWILLALAIALSGNETSPLVSIWVLLCGVGFIVFVVVVLRPGLALMARRSPQGEPVKELYICITLSLVLAASFVTDAIGIHALFGAFVIGIVVPKDGAFAGVLIEKIEDLVSGLLLPLYFVSSGLKTNVATISGGLSWGLLAIVIFTACFGKIVGTLTVSMLFKVPFREALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAILVLMALFTTFMTTPLVMAVYKPARKGSPYKHRTIRRKDRESELRILACFHSTRNIPTMINLIECSRGIRKRGRLCIYALHLMELSERSSAISMVHKARNNGLPFWNKKRDDRDEMIIAFEAYQQLSSVTVRPMTAISSLNNMHEDICTSAHQKRAAIILIPFHKHQRVDGAMESLGHSFHTVNQRVLLHAPCSVGILIDRGLGGTTQVSASDVSYSIVVPFFGGGDDREALAFGLRMAEHPGIELKVVKFVGSLTGNVNEEAAEDETSISEFLGCTEKEDSMSYEERKIESKTDIVEALKSLNKFNLFLVGRATMSGTPLTNRSDCPELGTVGSFLASSEFSTTASVVVVQEYNALKNTRPLVEEEADGYVNEVPDTPAATNFAAERKHITTVQSIIKNCVLQLNFETAKVLTLKFFLRSNDWNRSLKDHNSKYLHII 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 7730755 7734272 + Bma019247.1 Bma04g00738 81107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00738 849 Gene3D - 486 717 - -
Bma04g00738 849 PANTHER CATION/H + ANTIPORTER 8 771 - -
Bma04g00738 849 PANTHER CATION/H(+) ANTIPORTER 19 8 771 - -
Bma04g00738 849 Pfam Sodium/hydrogen exchanger family 44 427 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Bma04g00738 849 Gene3D - 36 438 IPR038770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00738 - - - twl:119989874 1193.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00738 Bma-Chr4:7730755 Bma12g00055 Bma-Chr12:1109001 0 dispersed
Bma01g00509 Bma-Chr1:4189789 Bma04g00738 Bma-Chr4:7730755 0 transposed
Bma01g01881 Bma-Chr1:69254349 Bma04g00738 Bma-Chr4:7730755 0 transposed
Bma07g00982 Bma-Chr7:37931621 Bma04g00738 Bma-Chr4:7730755 1.35E-90 transposed
Bma12g01144 Bma-Chr12:43905639 Bma04g00738 Bma-Chr4:7730755 2.86E-07 transposed
Bma04g00738 Bma-Chr4:7730755 Bma08g01037 Bma-Chr8:49500249 1.38E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g290 . . Bda03g00840 . Bpe04g00795 . Bma04g00738 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0671 Cone15ag0680 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma01g00509 . 11 822 Antiporter Super Family AT2G13620 69.9 0.0e+00 1124.0
Bma01g01881 . 76 824 Antiporter Super Family AT3G53720 69.7 8.9e-294 1006.1
Bma04g00738 . 84 765 Antiporter Super Family AT3G53720 50.3 6.5e-188 654.4
Bma12g00055 . 80 785 Antiporter Super Family AT3G53720 50.1 4.0e-185 645.2
Bma12g00057 . 1 620 Antiporter Super Family AT3G53720 50.9 2.8e-162 569.3
Bma12g00055 . 1 804 Antiporter Super Family AT5G41610 67.0 1.5e-299 1025.4
Bma04g00738 . 7 765 Antiporter Super Family AT5G41610 64.9 3.1e-281 964.5
Bma12g00057 . 1 616 Antiporter Super Family AT5G41610 66.5 7.3e-230 793.9
Bma01g01881 . 1 801 Antiporter Super Family AT5G41610 52.1 4.3e-214 741.5
Bma12g00055 . 1 801 Antiporter Super Family AT4G23700 66.3 4.1e-297 1017.3
Bma04g00738 . 7 764 Antiporter Super Family AT4G23700 61.7 4.7e-269 924.1
Bma12g00057 . 1 616 Antiporter Super Family AT4G23700 60.4 1.6e-208 723.0
Bma04g00738 . 4 779 Antiporter Super Family AT3G17630 71.7 0.0e+00 1085.1
Bma12g00055 . 11 780 Antiporter Super Family AT3G17630 65.2 1.0e-276 949.5
Bma12g00057 . 1 615 Antiporter Super Family AT3G17630 62.7 4.4e-211 731.5
Bma01g01881 . 8 803 Antiporter Super Family AT3G17630 51.8 1.1e-209 726.9
Bma12g00055 . 12 783 Antiporter Super Family AT1G64170 59.1 4.6e-240 827.8
Bma04g00738 . 6 764 Antiporter Super Family AT1G64170 55.4 6.8e-228 787.3
Bma12g00057 . 1 616 Antiporter Super Family AT1G64170 54.6 9.7e-174 607.4
Bma01g00509 . 11 822 Antiporter Super Family AT2G13620 69.9 0.0e+00 1124.0
Bma12g00055 . 12 783 Antiporter Super Family AT1G64170 59.1 4.6e-240 827.8
Bma04g00738 . 6 764 Antiporter Super Family AT1G64170 55.4 6.8e-228 787.3
Bma12g00057 . 1 616 Antiporter Super Family AT1G64170 54.6 9.7e-174 607.4
Bma12g00055 . 1 801 Antiporter Super Family AT4G23700 66.3 4.1e-297 1017.3
Bma04g00738 . 7 764 Antiporter Super Family AT4G23700 61.7 4.7e-269 924.1
Bma12g00057 . 1 616 Antiporter Super Family AT4G23700 60.4 1.6e-208 723.0
Bma12g00055 . 1 804 Antiporter Super Family AT5G41610 67.0 1.5e-299 1025.4
Bma04g00738 . 7 765 Antiporter Super Family AT5G41610 64.9 3.1e-281 964.5
Bma12g00057 . 1 616 Antiporter Super Family AT5G41610 66.5 7.3e-230 793.9
Bma01g01881 . 1 801 Antiporter Super Family AT5G41610 52.1 4.3e-214 741.5
Bma04g00738 . 4 779 Antiporter Super Family AT3G17630 71.7 0.0e+00 1085.1
Bma12g00055 . 11 780 Antiporter Super Family AT3G17630 65.2 1.0e-276 949.5
Bma12g00057 . 1 615 Antiporter Super Family AT3G17630 62.7 4.4e-211 731.5
Bma01g01881 . 8 803 Antiporter Super Family AT3G17630 51.8 1.1e-209 726.9
Bma01g01881 . 76 824 Antiporter Super Family AT3G53720 69.7 8.9e-294 1006.1
Bma04g00738 . 84 765 Antiporter Super Family AT3G53720 50.3 6.5e-188 654.4
Bma12g00055 . 80 785 Antiporter Super Family AT3G53720 50.1 4.0e-185 645.2
Bma12g00057 . 1 620 Antiporter Super Family AT3G53720 50.9 2.8e-162 569.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma04g00738 Bma_Chr04 FPKM 10.617552 12.25672 15.700524 14.902542 2.168515 1.990245 2.200187 19.252726 20.628571 20.857126