Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma04g00746 TTGACTCGGCAGCCTCCTAATTCGCCTCTTCTGAAACTCCAACACAACCGTGAAGGCTCCATGAATAATCAACACAGTCGAGAAGAAGATGAAGACGAGAGAGAAAATGGATCAGACGAACCCAAAGAAGGAGCTGTGGAGATCGGCAATCGAAGACCAAGAGGCCGCCCTCCTGGATCCAAAAACAAGCCGAAACCACCGATTTTCGTGACTCGAGACAGCCCAAACGCCCTCCGCAGCCACGTAATGGAAGTAGCCGGTGGGGCTGACGTTGCAGAGAGCGTCGCTCAGTTCTCTAGGCGCAGGCAGCGCGGCGTGTGCGTTCTGAGCGCTAGCGGCTCAGTTACTAACGTCACTCTCCGACAGCCAGCTGCACCCAGTGCTGTGGTGGCGCTGCAAGGACGGTTCGAGATTTTGTCACTGACCGGAGCTTTCTTACCCGGACCGGCCCCACCAGGCTCGACGGGTATGACCATTTATCTCGCCGGAGGGCAAGGGCAGGTGGTTGGTGGTTGTGTAGTTGGGCCATTAGTTGCAGCTGGGCCAGTAATGGTGATTGCTGCAACTTTTTCTAACGCCACTTACGAAAGATTACCTCTCGAAGAAGACGACGATCATGAAGCTGGTATAGGCAGTACCGGAGCTGGAACCTCGCCGCCTTCCATTGGAGGCAGTGGAGGGAGTTTTCACCCCAATTCCTCTGATCTTTCTGCACTTCCTGCTTATAATTTGCCTCCTAATCTTCTCCCCAATGGAGGTCAACTCGTACATGACCAGTCTGCATATGCTGCATGGGCGTCTCATGGGAGACCTAGCTTCTGA 822 54.26 LTRQPPNSPLLKLQHNREGSMNNQHSREEDEDERENGSDEPKEGAVEIGNRRPRGRPPGSKNKPKPPIFVTRDSPNALRSHVMEVAGGADVAESVAQFSRRRQRGVCVLSASGSVTNVTLRQPAAPSAVVALQGRFEILSLTGAFLPGPAPPGSTGMTIYLAGGQGQVVGGCVVGPLVAAGPVMVIAATFSNATYERLPLEEDDDHEAGIGSTGAGTSPPSIGGSGGSFHPNSSDLSALPAYNLPPNLLPNGGQLVHDQSAYAAWASHGRPSF 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8030831 8031652 + Bma019258.1 Bma04g00746 81115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma04g00746 273 Pfam Plants and Prokaryotes Conserved (PCC) domain 79 192 IPR005175 -
Bma04g00746 273 MobiDBLite consensus disorder prediction 21 50 - -
Bma04g00746 273 MobiDBLite consensus disorder prediction 1 20 - -
Bma04g00746 273 CDD DUF296 79 162 IPR005175 -
Bma04g00746 273 PIRSF ESCAROLA 2 273 IPR014476 GO:0003680
Bma04g00746 273 ProSiteProfiles PPC domain profile profile. 75 211 IPR005175 -
Bma04g00746 273 MobiDBLite consensus disorder prediction 214 230 - -
Bma04g00746 273 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 204 - -
Bma04g00746 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 17 272 - -
Bma04g00746 273 Gene3D - 78 208 - -
Bma04g00746 273 MobiDBLite consensus disorder prediction 204 230 - -
Bma04g00746 273 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 272 IPR014476 GO:0003680
Bma04g00746 273 MobiDBLite consensus disorder prediction 1 76 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00284 Bma-Chr3:2105603 Bma04g00746 Bma-Chr4:8030831 1.08E-76 dispersed
Bma04g00746 Bma-Chr4:8030831 Bma08g01008 Bma-Chr8:49104811 1.30E-73 dispersed
Bma02g00799 Bma-Chr2:42840999 Bma04g00746 Bma-Chr4:8030831 7.10E-72 wgd
Bma04g00746 Bma-Chr4:8030831 Bma05g01075 Bma-Chr5:49485995 1.48E-143 wgd
Bma04g00746 Bma-Chr4:8030831 Bma06g01590 Bma-Chr6:52144263 8.69E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma04g00746 - - ming:122077451 296.975